RNA id: XM_022671534.1


Basic Information

Item Value
RNA id XM_022671534.1
length 1615
RNA type mRNA
GC content 0.40
exon number 4
gene id ccdc167
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22939555 ~ 22949199 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAACAGTGTTCCTTCACTGCAGGTGAAGAAGCAGCGCTCCGTCATCTCTAAACAGAGCTCGGAGCGTGATTCTGTAGCTGCATCAGTTCAGATCTCTCTACAGCATGACGGAGCCGCGGAGCCGCGACCGGGAGAGGAGGAGTGTAGCGGCGGAGATTGATCGTGTTGAAGAAAAGCGATTGCGCTGCCAGGGCAGTCTGGAGAGGGTGGAGTTCAGATATCGGCGGGAACAGCTTTCAGATGAGGACGGAAAAGGCCTGGAAGATGAAATGGCTATCATGAACGAGAGGATACAGAAATATGGTATGAGCTTGAGGGTGCTGCGAGGAGAGAACAGGAAGAATATGATGCTCTCTGTAGCTCTCTTGGCCATTAGTGCTCTTTTCTACTACACCTTTATCTATTGAGGACATCCGCTGCCTGTCATAATCACCGTTCTGAGATGTACAGATTTTGAGCATTCTACTTTTTTATTGGCTAAACATTGAGCATCCATTACTGCATTGATTCTTAAGTAGGATTTTAAATTGTATATGCCTCAGCTACACTTTTCAGTAAGGCATATAAAATGTTAACAAATGTGCATATAGTCACTGTCACATTTGATGACATGGATCCATGTTGAATTCTTTGAAAGGGGGTTTACTTATTCTTTTCCATGTTTGAGATGCAAGGTGTTTGCTCAAAAGCAGTGATACTGTATGAGTGTGCAGATTTCCACACACTGAGTTGTATTTGCCAAATGTAACACTACTGCACGTGTcttataaaacattattgaACTACATTCTGCTGCATGATTTGAACTCTTGGGTTGGTTCTCATTAACACAGCCTCTATAGCCTTGTTTCCATTAAGCACCACTATAGGGCAtgtttacacctggcattagcatgcattttgtatttttgatcgTAACTAGATAAACTCTGTCAATATTCTTTTTACCCTTTAgctgtgtgtatagtgtgacCAGATGAGatccaaatatatttttctgcatAGAAAGCACACAAGCACAAACATAACATGGTTTTActtcctgtaaaaacagttctATTGAATAGAGTACCCTCATTCaatgttcatgtttatctggtCCAAATGGAGCCATTTTATTGACAGCAATTTTCGacagggactagacaaactatgtgtgtgcatttgcacagcTGTGTCAGCAATTGGTGCAATTTAATCAAGCTGAATTTGATAGATAATTCTTTAGGGGGTGTCCCCAAACATTTGTGCAAAAATCACTGCAATGTTAGAGTCTTAAACTtagaattaaatgtaaaatgtctaAACAGAAACTCTCTGATAATTACAGCTGGTTCAAGATGATTATATCCAATCtcagaaacacatttttttggaTGAGAGCGGTCTCTgaccacaaaattacacattaatGCCAAGTGTAAACAGGATCTGAATGATGAGATCTATTGATGAATGTAAGGTATTGTCTGCTGATGTGTAGATGAGCAACAGAAAGCAGCTGCTATGCAGCTTATGTCTCttattaaagtaatattttcATTCAAAGCTGTATAAACACCTATGCAACCAAtatgcaaaataaaatgttaagtgTAAATAGTGACAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89135 lncRNA upstream 620007 22318843 ~ 22319548 (+) True G66062
TU89127 lncRNA upstream 655483 22283434 ~ 22284072 (+) True G66056
TU89125 lncRNA upstream 658064 22280774 ~ 22281491 (+) True G66055
TU89122 lncRNA upstream 659561 22279748 ~ 22279994 (+) True G66053
TU89117 lncRNA upstream 660824 22278428 ~ 22278731 (+) True G66048
TU89215 lncRNA downstream 5078 22954277 ~ 22955434 (+) True G66140
TU89219 lncRNA downstream 9242 22958441 ~ 22962842 (+) True G66144
TU89218 lncRNA downstream 14672 22963871 ~ 22969303 (+) True G66143
TU89293 lncRNA downstream 158687 23107886 ~ 23204707 (+) True G66183
TU89320 lncRNA downstream 235158 23184357 ~ 23189666 (+) True G66201
XM_007238164.3 mRNA upstream 641876 22284747 ~ 22297679 (+) True bcap29
XM_007238163.3 mRNA upstream 641876 22284747 ~ 22297679 (+) False bcap29
XM_022671528.1 mRNA upstream 661533 22274641 ~ 22278022 (+) True dus4l
XM_007238165.3 mRNA upstream 661552 22274649 ~ 22278003 (+) False dus4l
XM_007238166.3 mRNA upstream 661552 22274663 ~ 22278003 (+) False dus4l
XM_007256034.3 mRNA downstream 50803 23000002 ~ 23003468 (+) False c7h11orf98
XM_015607538.2 mRNA downstream 55556 23004755 ~ 23012773 (+) False LOC103025638
XM_007256033.3 mRNA downstream 57734 23006933 ~ 23012773 (+) False LOC103025638
XM_022671535.1 mRNA downstream 58259 23007458 ~ 23012773 (+) True LOC103025638
XM_007256032.3 mRNA downstream 71185 23020384 ~ 23085044 (+) True lrp6
TU88777 other upstream 1254721 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 1914981 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 1981920 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 3145276 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 3598676 19280300 ~ 19340879 (+) True alyref
TU89229 other downstream 50171 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 181895 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 181895 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 494975 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 534134 23483333 ~ 23483933 (+) True G66303

Expression Profile