RNA id: TU89218


Basic Information

Item Value
RNA id TU89218
length 1637
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G66143
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22963871 ~ 22969303 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTCAGTAGACAAGGTCAGTACAGAGAGGGGAAAGAAGGTAAATGAGATGACGAGAAGAGGTGAGAGAAAATGCAAAAgcatctttacacacacacacatacacacacacaccccagagGGCATGTCCTGTACCTGATGCAAACAGGTCTAGACTGGGGGCAGTGTCTGATATAGGGATGACTGGTTCTGACACGGAATTACAAAAAtctagagacaaaaaaaaaacataaccacAGACAGCACAGACTCATACACACAGCggatacatgaaaaaaacatcaaacccACCACATGCAAATGATCCTAAACaaaaaagcacttcagtttacaTCAATTAAGCTATGGTAATCCACACAAAACATGCCAACACACCAAACCACCTCTGTGAAACAAGTGCAATACAGTGACTCATATGTAGAAAATAAACTATGTGCATCATTCTCACATAGATGATTCATATTTGCCTCTCTGCTAGAGAGGCTACATCGAAAATATTTGTAATGTCTTCTTTAATCACAAGGTGGCCCAGCTGAGCAGGACATACAGTAAATGTAGCCATAATTAAGTGTTACATTTCTTGTGCACTTAATGTTTCCATGCAGTTTACTTATTTTggcagtttttgttttaaatgatgtCTCTCTTAAATCTACACTGTTGAATTAAACTGATCATGTTACTATTTCTTTAAGACCTTTATGGGATATAGAAATGAACTCTTATGAACAGCTGAAACTGCTGAAGGCTGAATGGATTAATGTATGtaaatgcattgtttttgtaacatcACAAACATCAAAAATAGGCTGTATATGCAGCTTGGGTTCACATATGAACTGTATTAACTCTGTATTAACTTTTgcttctcttgttttgtttttttgtcaccCTTTAAATGACGCATGTTTCAATAATGGGCACTCAGCAAGCATTTACCACCAAACAGATCTGTTGTGAGGGCTACAGAGCTTGAGTTGATAGGGTTGTTAGCAGTAAGTGGGGTCTGAGTGGCGGGGGGCACCACTGAGCTGAAGCAGGAGGTACTGCTCTCTACAGGCTGCATGGAGAACAGGTCCAGCTGTGGGGAAACTGCTGACTGTCCTGGAGATGGGGCAAAGGGGTCTTAACAGGAGAGAAAAGTTTAGCCATTTCTGTGAAGGAAACCTCTCTACTGACCTCCAAGGAGATCCGCTGAGCCGGAGGTGGAGCCGGCAGCGGTAGTGGGAGGAGCTAAAGAGATGGCTGCCTCACCGGTTGTGGCGCTAGGTGCGGCTGTCGCAGGACAGGTGGAGTCTACAGCGGGAGAGGGGTCGGGAAGGAGAGTCTCCGTGGTGAGGGAACCGAATTCTACATAAGCCATGACCCCGAAACAGAAGCATACATTGACAGACAACAGAACACAAAGGcaaaacagaggacaggagcacaTTTAagggagaaagaagagagagagattcgaTCTAAGACAAGATTAGAAAGAAATGTTAAAGGAAATCTACTGGCTTGATTTATAATGCAGTCTCTCAGCTTTGCATCCAGCAACATTATCAACCCTTAGAAGTCACAGTTTTTgccaaaaataacaaaagtttgcaattagctaattagccattgcaattacattttaatttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89219 lncRNA upstream 1029 22958441 ~ 22962842 (+) True G66144
TU89215 lncRNA upstream 8437 22954277 ~ 22955434 (+) True G66140
TU89135 lncRNA upstream 644323 22318843 ~ 22319548 (+) True G66062
TU89127 lncRNA upstream 679799 22283434 ~ 22284072 (+) True G66056
TU89125 lncRNA upstream 682380 22280774 ~ 22281491 (+) True G66055
TU89293 lncRNA downstream 138583 23107886 ~ 23204707 (+) True G66183
TU89320 lncRNA downstream 215054 23184357 ~ 23189666 (+) True G66201
TU89345 lncRNA downstream 256727 23226030 ~ 23226867 (+) True G66207
TU89331 lncRNA downstream 347581 23316884 ~ 23323096 (+) False eps8
TU89343 lncRNA downstream 347581 23316884 ~ 23323361 (+) False eps8
XM_022671534.1 mRNA upstream 14672 22939555 ~ 22949199 (+) True ccdc167
XM_022671533.1 mRNA upstream 14672 22939561 ~ 22949199 (+) False ccdc167
XM_007238164.3 mRNA upstream 666192 22284747 ~ 22297679 (+) True bcap29
XM_007238163.3 mRNA upstream 666192 22284747 ~ 22297679 (+) False bcap29
XM_007238166.3 mRNA upstream 685868 22274663 ~ 22278003 (+) False dus4l
XM_007256034.3 mRNA downstream 30699 23000002 ~ 23003468 (+) False c7h11orf98
XM_015607538.2 mRNA downstream 35452 23004755 ~ 23012773 (+) False LOC103025638
XM_007256033.3 mRNA downstream 37630 23006933 ~ 23012773 (+) False LOC103025638
XM_022671535.1 mRNA downstream 38155 23007458 ~ 23012773 (+) True LOC103025638
XM_007256032.3 mRNA downstream 51081 23020384 ~ 23085044 (+) True lrp6
TU89211 other upstream 14679 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1279037 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 1939297 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 2006236 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 3169592 19780663 ~ 19794279 (+) False LOC103037311
TU89229 other downstream 30067 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 161791 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 161791 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 474871 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 514030 23483333 ~ 23483933 (+) True G66303

Expression Profile