RNA id: TU89293


Basic Information

Item Value
RNA id TU89293
length 376
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G66183
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23107886 ~ 23204707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttaaaatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89218 lncRNA upstream 138583 22963871 ~ 22969303 (+) True G66143
TU89219 lncRNA upstream 145044 22958441 ~ 22962842 (+) True G66144
TU89215 lncRNA upstream 152452 22954277 ~ 22955434 (+) True G66140
TU89135 lncRNA upstream 788338 22318843 ~ 22319548 (+) True G66062
TU89127 lncRNA upstream 823814 22283434 ~ 22284072 (+) True G66056
TU89345 lncRNA downstream 21323 23226030 ~ 23226867 (+) True G66207
TU89331 lncRNA downstream 112177 23316884 ~ 23323096 (+) False eps8
TU89343 lncRNA downstream 112177 23316884 ~ 23323361 (+) False eps8
TU89349 lncRNA downstream 121560 23326267 ~ 23424924 (+) True G66210
TU89362 lncRNA downstream 191039 23395746 ~ 23396291 (+) True G66223
XM_007256032.3 mRNA upstream 22842 23020384 ~ 23085044 (+) True lrp6
XM_015607538.2 mRNA upstream 95113 23004755 ~ 23012773 (+) False LOC103025638
XM_007256033.3 mRNA upstream 95113 23006933 ~ 23012773 (+) False LOC103025638
XM_022671535.1 mRNA upstream 95113 23007458 ~ 23012773 (+) True LOC103025638
XM_007256034.3 mRNA upstream 104418 23000002 ~ 23003468 (+) False c7h11orf98
XM_022671544.1 mRNA downstream 17807 23222514 ~ 23320960 (+) False eps8
XM_022671538.1 mRNA downstream 17808 23222515 ~ 23323116 (+) True eps8
XM_022671537.1 mRNA downstream 17808 23222515 ~ 23323116 (+) False eps8
XM_022671540.1 mRNA downstream 17808 23222515 ~ 23323116 (+) False eps8
XM_022671539.1 mRNA downstream 17808 23222515 ~ 23323116 (+) False eps8
TU89229 other upstream 104465 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 158694 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1423052 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 2083312 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 2150251 20957135 ~ 20957635 (+) True G65565
TU89467 other downstream 239467 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 278626 23483333 ~ 23483933 (+) True G66303
TU89518 other downstream 493445 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 1162785 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 1163666 24368373 ~ 24383022 (+) True rpap3

Expression Profile