RNA id: XM_007256029.3


Basic Information

Item Value
RNA id XM_007256029.3
length 2831
RNA type mRNA
GC content 0.38
exon number 3
gene id crebl2
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23131080 ~ 23138011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGCGTGTCTGGCTGATGAAAACAAGAAGTCTATGGGCGGAAACGATGCTAAAAACATTGGCAGAACTCAGGGCTTCTTGTGAGTGTTCTGGGTCCGGATTTAAGACAGAAACAGGTGGAAACCGGGGCTCTCGCGCAGGCACGCGCCCGTCCGCTCGGTGTGCAGACTGTCCGCGCGGGAGCGCAGCTGGCGCGGACTGGACCCGGGCTTCGGTCGGTTAGCAGACAGGCTATCTGCTGCTGTTCCCAGACGTGGGTCAGTCATCCAAAATGGATGACAGCAAGATGGTTGGTGGAAAAGTCAAGAAACCAGGAAAACGTGGTCGTAAACCTGCCAAGATTGACCTGAAAGCCAAACTTGAACGAAGCAGACAGAGTGCTAGGGAATGTCGGGCCAGGAAGAAACTGCGTTACCAGTACCTGGAGGAACTGGTGTCCAGCAAGGAGAGAGCCATCTGTGCTCTGAGAGAAGAGCTGGAGATGTACAAGCAGTGGTGCTCTGCCATGGACCAGGGGAAAATCCCTTCCGAAATCAAGGCTCTCTTAACTGGAGATGATCAGAAAACCTCTCAGAGCACCAGCACCAAAACACCCAAAAATGGCAAATACAACTCGTCAAGTATAAGCCAGAGTAAGTCTGCGTAGGTTACAGTCAGACACCTGTTTTGACATGCTTTCCACATCTTGGAGATGATGAGACAGAAGATTTAGGGTAAACTCACTTTATGTGAAGGTGTAGTGTAACAAGCACATAGGCAAGTTATGGCTATGATGGTTATGTGTATGATGAAAACACCTGGTTAAAAACACTAAGTCTCCTGTTATTAAAGAACGCAGTAGTCTTCTAATGCCCATTGCTTGGGCCAGTGCGTACCCAGAGAACTTGCTGTTGTTCACATCAGTTTTCTTAGACGTAGAACAAACTAATAGAATGTAATACACTGTATGTACAAATGCTTGTGGACACccattctaataaatgcattcagctattttaagttttactaACTGCTGACACAGAGACAGCTTAATACACAGCTTATCTAGTCCTTGTCTAATGCCAGTAGAACAGGACCCTTTGgaacaaataaatatgaatctactggcaccatgcctaatgcaaGACATATGCTGTTGATTTCTGAAGAAAAATTGAATGAtctggtgtcccaatacttttgtccatatagtgtatgtaggcgtagaaaaataaaagtgttaaattctGTAGAAATCCAAATAGTTAACACAACTAAGGTATGGGTACTTGGCAGCAAAACGTGCAATAAGTTTAAAATATGACAAACCCTTCAAATACAAAAAGACATGCAAACCCTGGGTGTTGCCAAAATGATTTAGCTTTGCTCTAAGCACTTTAAAGAATTTTGAAGATTTGCATAGCACTGGTAAAAgctcttatttttgtctttattttttaagggaTGGCACAAAGTAATGGGTAGGGGTCTATTTTtggaaatatttatttctttaactaAAACGGAAAGcactttcacttttttcatttgaacttaaaattaaatttgtttAGTGGTCCAACTGGCATTGCATGATGAGAAATGGCTATGGCTCTTGGTTAAAATCTGAGAGAAAGTGTATTGCAATACCACAATGTTTCCTTTTGTGAGATGACCATAGACGTCCTATTCTCAGACCACAAAATTATGATATTGTAGTTACAACACCGACAACTGTGTGCGTTTGATCTTTGTATTGTTATCTGTGTATTTACAATCATGCCTTTTGTTAAgtcaaattataattataaattctcATTTAGACTGAAATGTATGGCTATAGTTCCATATATTGTCCATGTCATTCATCATTTCAAAACAAGTACAACAAACAAAATGGTGGGCGgtatttatttctgttctttCACTTTAGAGATAGCCTGGTATGTGTGTTCAGCTCTGAATccagacattttttattttagagaaaGGCAAGTTGGCTCTGATCTCTGCAGTGTGGTAGATCTCCAGGACCAGGGTTTGACATCCCTGTTTCACACTAGTGTTCAGAATCTGCATATTCGGTGTGAGTTGTGCAATGAATAGACTCTTTGCAGTTActtttcaaatgtttaaaatcactgttttcaataatataaacacaatttgaaGCAGACTTTATAGGCTGGACAAGGATTACTTAATAACTATGTAAGCTGTGCATTGCTGTACGTtctgtttaatataatattaaaattatttgattATCATATCTTGCCAGTCCTAAAAACCTCAATATAAAATTACGTAAATTAGATACAGATGAAAATTAGAACAGTCtgaaatttaatttagtttttaaagtCATCATTTTACCAGAATGCCCAGGCTTTTGTGAAAGACTGCATGTGTTATTACAAATAATAGTAACATTTAATATGACAAGTGATTTCAAACTTTTGAGTGGTTGAGTATATGTATTATTGACATGATCCAGATTTGCTGCATGGCTATTAAATTTCCTGAAAAACACAACATCCCAGAGCAACTAATGCAGAGTGCAAATTAGCTTCTAAGGAACAGCtccaagaaaaaaattaagcttAATGACTGGAGCTACTATTTGGCATCAAAGTATATCTCAAGATTtctatgtttttaaatgtgttgtcCCGTTTTCATGCCTGTTTGATTCCTGCGATGTGACCTTGTTTAGCacagaaatgtatatttttatatttatatgtaaagtTGTGTATAGATATGATGGAGGATGCTCATAAAATTTGTACATGAAACAAGAATAATATGGTTGTGTAACTGGTTTGTTAAAACTGTCTAAAAAAACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89218 lncRNA upstream 161777 22963871 ~ 22969303 (+) True G66143
TU89219 lncRNA upstream 168238 22958441 ~ 22962842 (+) True G66144
TU89215 lncRNA upstream 175646 22954277 ~ 22955434 (+) True G66140
TU89135 lncRNA upstream 811532 22318843 ~ 22319548 (+) True G66062
TU89127 lncRNA upstream 847008 22283434 ~ 22284072 (+) True G66056
TU89320 lncRNA downstream 46346 23184357 ~ 23189666 (+) True G66201
TU89345 lncRNA downstream 88019 23226030 ~ 23226867 (+) True G66207
TU89331 lncRNA downstream 178873 23316884 ~ 23323096 (+) False eps8
TU89343 lncRNA downstream 178873 23316884 ~ 23323361 (+) False eps8
TU89349 lncRNA downstream 188256 23326267 ~ 23424924 (+) True G66210
XM_007256032.3 mRNA upstream 46036 23020384 ~ 23085044 (+) True lrp6
XM_015607538.2 mRNA upstream 118307 23004755 ~ 23012773 (+) False LOC103025638
XM_007256033.3 mRNA upstream 118307 23006933 ~ 23012773 (+) False LOC103025638
XM_022671535.1 mRNA upstream 118307 23007458 ~ 23012773 (+) True LOC103025638
XM_007256034.3 mRNA upstream 127612 23000002 ~ 23003468 (+) False c7h11orf98
XM_022671544.1 mRNA downstream 84503 23222514 ~ 23320960 (+) False eps8
XM_022671538.1 mRNA downstream 84504 23222515 ~ 23323116 (+) True eps8
XM_022671537.1 mRNA downstream 84504 23222515 ~ 23323116 (+) False eps8
XM_022671540.1 mRNA downstream 84504 23222515 ~ 23323116 (+) False eps8
XM_022671539.1 mRNA downstream 84504 23222515 ~ 23323116 (+) False eps8
TU89229 other upstream 127659 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 181888 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1446246 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 2106506 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 2173445 20957135 ~ 20957635 (+) True G65565
TU89467 other downstream 306163 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 345322 23483333 ~ 23483933 (+) True G66303
TU89518 other downstream 560141 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 1229481 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 1230362 24368373 ~ 24383022 (+) True rpap3

Expression Profile