RNA id: XM_022671543.1


Basic Information

Item Value
RNA id XM_022671543.1
length 4859
RNA type mRNA
GC content 0.46
exon number 23
gene id eps8
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23222514 ~ 23323361 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCGAAGAGCTCTGAAACCTAACGGAGAGGAGCTCATTCACGCCTCACCTCTCTCAGAGAGCGCCACGCTCTCACACACCGTCTTATTTTACtgaacactcactcactcacacagtagAGAGGTTTATTCAGCTCCGACTTCAGGAGGAGAGGTGCAGACCCGGACTGACCCCGGACTCCTCTATAACCATGAATTAGCGCCGTGTGGGTCACGATGCGAGGCTGAGAAGTTGGGGAACAGCTTGATGTCTTTGGATTGGTGACCCCCTTGTCTgaagtccaaaatgaatggctATGCTCCCCCTGCCTACCCATCGGGAGGCTTCAGTTCCTACCCATCCCAGCTGAACGGCCATGGCTCCCAGTCACCAGAGCTGCCAGCACGCAATGCCAAGTCCAGTGCAAAGGCTCTCTATgAACAAAGGAAGAGCTACACTAAAACCAGCATTAACAGTATGACAGACACGTCGCAGTACCAAGTTGAACATCTTACAACGTTTGTCATGGATCGTAAGGATGCCATGATCACTATAGAAGACGGCATTCGTAAGCTGCGTCTGCTGGATGCTAAAGGAAAGGTGTGGACGCAGGAAATGCTGCTGCAGGTGGATGAAAAAGCCGTCAGCCTCATTGACCCGGACACCAAGaatgAGCTGGAGAACTTCCCCATGGGCACAGTGCAGCATTGCCAGGCCATCATGAATTCCTGCAATTACGACTCCATCCTGGCTCTGGTGTGTAAAGAGTCTGGGCAGGGCAAACCAGACCTGCACCTCTTCCAGTGTGATGACATCAAGGCAAATTTAATACATGCAGATATCGAAAGTGCCATCCATGACCACAAAGGCGGAAAAGTGAAGAAGAGGCCAGAGACCCTGAAAATGATTCTAAAAAGCGATGGGGCTATTCCGCCTCCTCCGGGTGGTCCCGCCCCTGAGCCCCCTGCCACTGTCGGTCAGGTGGATGTAAAAAGCAGAGTGGCTGCCTGGTCAGCTTGGGCCAATGAGCAGCAGGACTATGATAAACAGAGGCCGTACGGGGAACATGATGAGTCTCCGGAGATGACTGCTGCTCGAGTGGATCGAGACGTGCAAATCCTAAACCACATCCTGGACGATATCGAGCACTTTGTCACCAAACTCCAGAAAGCTGCAGAGGCGTTTAATGAGCTTTCAAAGaggaaaaaatctaaaaagagcaaaaagaaGGGTCCGGGAGAGGGAATGTTAACTCTGCGAGCGAAGCCCCCAGGACAGGAGGAGTTTGTTGACTGCTTTCAGAAATTTAAGCATGCCTTCAACCTGCTGGGAAAGTTGAAGAACCACATTCAAAACCCAAGTGCTGTGGATCTCGTTCACTTCCTCTTTACACCACTCAGAATGGTTATTCACACGTCAGGAGGAGTGGATTTGGCAAAAAGTGTAGTAGTTCCCCTCCTCACCAGAGAGGCAATAGACTTCCTGCACTCAGCAGGGACCCCTGAGGAGCGCCACCTTTGGGTCACTCTGGGAGATGGCTGGACCAAATGCAGGCTGGAGTGGCCTAAGGATCATTACTTCCCCCCTCACACACTGCGCTTCCGGGATGGCTGGGAGCCACCGGTGTTGGTGTCTCGGGAGCAGGACCTGACACAGCTGGCTGAAACCCTTGCTCAGGCTGAGATCCACAGACAGGAGGAGGTGAGCCGCAGACTCCACCATGAGCAGCAGGCCAGAGTGCAGGATTTCCCCATAGCAGACGGAAGCTACGATGGTAGAGGCCAGCCAAGAAATTTTGCCAAATCTAAATATGACTTTGTGGCAAGGAATGGAACAGAACTCTCTGTGGTTAAGGATGAAGTGGTGGAGGTCATGGACGACAGGAAACAGTGGTGGAAGGTTCGAAATGCGACTGGGGCCACAGGATACGTGCCAAACAACATCCTTGAGATCAGCAGGGCGGTGGACATGACTGGACGTGGAGAGCCAATTTACAGCCATACAATTCAGCTAATGATGCCAAAGAAGGAGTTTGAGCTGTTCAAGCAATTGCTGGGAGAATTAAACGAGAAGCAGAGAACAGACTATGTACCAAAGCCTGTATCGACCGCCATCCCGCCGGCTCCGACGccacctcctcctgctcctgcaCTGGTGCAGCTGCCCACTCCCCCACTTCCCCCTGCAGCTTTCCCTCCAGCCACAGAGCCCCAGAGGAACTCACCCTCTAACATCAGTCGCCAGAACAGCAGCAACTCCAGTGACAATGGCAGCGTCACCATGAGGGACCACCAAAAAGAGAGTGTTGCTCCCTCTAACCGCCGCAAGTCGAACATGGAGGAGGTGCAGGATGAGCTGATGCACAGGCTGACTCTGGGTCGCAGTGCTCAGAAGAAATTCCAGGCTCCTCCTCGTAGTGCCAGCCTTCCCGCAGTAAACATTACCTACGACTCGCACCCGGACGAGGTCCGAGCCTGGCTCGAGGCCAAAGGCTTCAGCGCTGTAACTGTGAACAGTTTGGGGGTCCTGACTGGAGCGCAGCTCTTTTCTCTTAATAAAGATGAGCTGAAGACTGTGTGTCCTGATGATGGAGCCAGAGTCTACAGTCAGGTCACTGTCCAGAAGGCAGCCCTTGAGAGGAGCTCTGGCTCCGAGCTGCAGGAGATCATGAGGAGGAGGCAGGAGAAAATAGCAGCGGTGGCCAGCGACTCGGGGGTGGAGTCTTTTGATGAGGGCAGCAACCACTgacacctcctcctcctcctccccctcgcCCTCTTTCATCCTTCTCACGTTGTCCTTTTTCTAGGACGCATCTGAGCGTGCCCAGTTCGCAGCCATCATGCGCCGCAGACAGGAGCTCCTGGACCCACCGGACAACGGAACCACCTCGGACGTAGACTAAAGCGCTTTACACCCCACCGTGAAATGAAGGAGTACTGTAGATGTAGGTTTTTGTACACTACTCGCATCATTAGACCAAAATAATGCAGCCAAGATTTcactagtttaaaaaaagagacatcCGAAAAACACATAGTTGTAGCGCCATTAAGTTAAGCATTAAATCAATGTTTTCAATCATTAATATTCTATTAAAAAGTGAATGAGCTGAATGTTCATTGTGTAGTCCTGCTGTAATTTGTTTGGGAGGAAGCAGACTGAAACATTTCGGATCAGAGCGTCTCAGAAAGAATCGTACTGTGTGCTTGCAAACAAGTCAGTGGTGGAGAATGTGATATAAGTGGAGAAGGGCACATTTAAACAGTGTCTTTTTGGagtagttttataaaaaaaggaaatgtttcCAGTGATGAATGAAGGACGAAGATTCGAGGACACTGAAATGAAGCTGATTTGCTGGACtttaatatgaacttttttttttggtggaatgATTTAGATACAAGTGTCCACTGTGAATGTGAAGCCTCAGATTGTAAAATGGGTTATCAGCTCAGAATGTAGTCGTGCTGGATCAGAGCTCTGGGCCATTTATTGGTTATGAATGTTATATGAAtggaaaagaggagagagttgGTGGCTATCATTGTGTACATTGTTGTTTGCTGGCAAAgaatgaatattatatatatatatatatatatgataatttCAATTTAAGCATAATGCCAAAAGAGTAAGTTTATAATGACTGGCAGTCATTGTGCAGCAGATGTGGCCACGTAACAGTACCTGTTTGAAAACGCCTTCAGCCGTATTTTATGATTTCAGGGATTTTTTTCATACTGCTTGCCTGTAAAGCCTACCCAGACTGGTTCAGTTCTTCCAAGAGCTGCATGGTTTAGTTACTCCCCAgtttttaatatcatttttgATACTCTCTGGCATCATTTTATCAGAATTATTTTGCAGTTgaacaaatgattaaaaatcagattaaacacattttttagattGCAGTTGTTTACTTTCACAGTCAGAAAGGTGGCATTACTAATATTAACACTCACTCTGAAGACTGGACTTTTAATAATCAGGGTCAGAATGACCCAAACCGACCTGAACTATTCATTATATGGTACCTACATGTATGATTTCCCCCCATATTTTCTCATGTATCTCAAGTGCCATGATCATAAATGAAGCTAATTTGTCATCTCCTCATCCACACACATCATCCTGTtacatttaaccctcctgttatttTAACTGTAAGTAAGTACAATAAATCTGACGTGTTTTACAACCATGTTTAACAAtcgaaagggttaaaaataattaaaagtaatatttgtCTCTAACATTTATCTTTCGCTTAgtttgtaaaaaacaaaaaaatatgatcaatattttaatgtgatCAGAAATGTTACTCTTTTACAGATCATGGTTCACTTGCACAAAGATAACTCACAGTtaagaacaaacaaaaaatacttgCCCTATGTTTTGGTCTAAATTGTACATATTTACTGACCCAAGGAGAATTTAGGAGAATTTGTAATCACATTAAATTTGTCATTTTtcgtttatatgtttattacacTAACTAAGTCTAGCAAAAAAGGATTCAAGCTCcaaatatgattaaatatatattatcggtatttttttttccactttgaATGGGTTAATTTAACCTGTaatataacaggagggttaaaatgcTTAAAGCCTTATTAAAGGCTCATTTTGTTAATCTTACAAATCATTTACTCTCTTTTCCCACTCATCTCTCTGTTCagatctgtttagtttagctctgtTCTGTTCTACTGTGTGAAAGCAGTGCTCTTCACTCTGTGCTTTGGTTAAAGGACGGCCATTCTCTGTTAACTGAACAGGAAATGGGAACAACTTCAACAAGAAGCGTTGTGCTGATAAAGATACAGAATAAATGGATACATATAACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89293 lncRNA upstream 17810 23107886 ~ 23204707 (+) True G66183
TU89320 lncRNA upstream 32851 23184357 ~ 23189666 (+) True G66201
TU89218 lncRNA upstream 253214 22963871 ~ 22969303 (+) True G66143
TU89219 lncRNA upstream 259675 22958441 ~ 22962842 (+) True G66144
TU89215 lncRNA upstream 267083 22954277 ~ 22955434 (+) True G66140
TU89349 lncRNA downstream 3151 23326267 ~ 23424924 (+) True G66210
TU89362 lncRNA downstream 72630 23395746 ~ 23396291 (+) True G66223
TU89364 lncRNA downstream 73367 23396483 ~ 23399420 (+) False LOC111193001
TU89365 lncRNA downstream 73367 23396483 ~ 23397609 (+) False LOC111193001
TU89370 lncRNA downstream 73367 23396483 ~ 23397609 (+) False LOC111193001
XM_007256029.3 mRNA upstream 84506 23131080 ~ 23138011 (+) True crebl2
XM_007256032.3 mRNA upstream 137473 23020384 ~ 23085044 (+) True lrp6
XM_015607538.2 mRNA upstream 209744 23004755 ~ 23012773 (+) False LOC103025638
XM_015607512.2 mRNA downstream 128447 23451563 ~ 23544843 (+) False rerg
XM_007256037.3 mRNA downstream 144417 23467533 ~ 23548257 (+) True rerg
XM_007256038.3 mRNA downstream 375054 23698170 ~ 23720094 (+) True LOC103027234
XM_007239000.3 mRNA downstream 593190 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 593190 23916306 ~ 23953720 (+) False etv6
TU89299 other upstream 84563 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 84563 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 219096 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 273325 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1537683 21629862 ~ 21684834 (+) False gen1
TU89467 other downstream 121058 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 160217 23483333 ~ 23483933 (+) True G66303
TU89518 other downstream 375036 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 1044376 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 1045257 24368373 ~ 24383022 (+) True rpap3

Expression Profile