RNA id: TU89349


Basic Information

Item Value
RNA id TU89349
length 3688
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G66210
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23326267 ~ 23424924 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catttcttgttttatttccagTAATCACACATAAAACGTCTGTGAAGATGATCAGTGATCGCCCCTCTAGTTTAAGTGACACATTGCACAAAAAAATGGCACCAAAGACAAACCGGACGCAAGTCTGAACTCGACGCACACTacgataaagaaaaaaagaacaaaaaaagagcagaaaagcCCATTTTCCTTCTCTTCTATAATGTGCCTGCTGGTGCTGGGAAGAGCTGTCTCGGCCGATCCACTACATGCCAGCTCTCCGAGCAGGAAACGTGAGGTGACTCTCAAACGACGATTCAGAAATTCTCCACAAGTATCTGCACAGCTTCCTAAAGTAGTGGATATTTGATCCGGTCATTTGCTGCTGAGAGAAATCTTTACAGTGAATAACTTTACTATTCGGCAGATCATCCTAGAAAAAGCTGTAGAGCTGGATTTGATCCACTTATTTTCTACATGGTGGACATGCTGTTATCTTAAAGGCTCTGTAAATGAACTCTGCTGCTACTGTCTGAATGAACTGATTATACAGGCATGTCTAATGCGTGGGTGAGATTTTAGATTTTGTTCAATAGCATGCATTGTTCCCTATTCTATACCCCATACTGGAAAACAGCTAAGAGATTCTTGAAAATCAAATTATTGTCAATTAATATCCTACAGTGATTAGAATCCTCAGTTTTTACACTGCAGCAGACATCTATACTGTGTCTTTCAAGGGAAATTCCACAGATTTTCACAATCTCTGCAGTAATCTATTGTTCATCTTTAAGAATATGTATTAAGAGTGGTTTTCTTTGTCGCAATAAATTCACAGTGATCGTCACAGGAACCAGAGGGTGGaagaatttaacttttttttttttttttttgctattataAGTTATTTTGACATTATGTCAAGAAGTGCCTTCTTGAATGGAGAAATAgaagtttaaataattttaggtttttgtgatgtaaaaaagttCAATGAAAGAGATCGTGTTCTGAGACCAAGTTTCCAAATGAGACCAAACGCCATTTATGGTAGAGGAGGGCAGTGTGACCACATCTTATATTATTGTGTTGTTTTCATGGTGAATAATATATTTTCCTGAGCATATTATATACATGGACAATGACTAATGAAAACAGATCagctgtatgttttattactgagAATATAATTAAGTAACGTTTATTAAAGTGAAGTGCAGCACATTATAATGTGGGTTTAGGGTTATATTTTTAGGAATATGGCACTATTGATGGATTTTGTCTGCATGTCAATATATCACAAATAATACTGTTTATCATACAAGTTTATCATGTTATCATATATATTAATCGTTCACCTCTAatacatgcatttttaatacAGCTGTCAgcgaaacaaataaaaataaaaacatgtgcaGGTTCACTGGTGGGTTTGGATAGTAAATTAAATGACAACACTATATAGACAGAAGTATTGCCTATACCTTGCCTGTAGTTTCGGTTTAATCTGAACTCAAATGTATTATCCTGTAGGAGGAGCTGTTGCTAActttttctactagattttggagcactgctgtgacgATCTGATTGCTGAACTcccattccagagaacacagttccactgctgcacagctcaatactggggggaTTTAACCTTTCAAATAATTGTATTGTTCTTCTTGTCTTCAGTGTCTTTTTGTCTCATATGTCTAACAGGGATCTTAAGATACAACACTTTACTGTATCTtgtgctttttactttttatttttccaattttttagTGCATATTATTGAATTGTTAAATGTCTGAATGTTTAGTGCTGCACTGTGGGTCTGAGAGTAACTGTGCTGTACAGTATTGCAGTATTGACTTTAACAAAAGACTGTGACTTTAATGTCATCAATGAACACCACTTAATGCATTCGTTTTTTAGATGTATTTTTGGGTTAAAGACATTGTGCTCTTGGTTGCTATAACCACCACTGTAAATAAAGGTGAGTTTATTAAACCACTCTCAACTACTTTTTTCTACATCTTGATGACGGAGCTGTGCAGAGAATTTGAAAAAACGGTATAATTTTCCTTTAAGAGAGTGTGCTGTATCGTGGTATAGAGTGTGCTCAGTGTCATGAGACTCTGAAGAAGAGCTGAAGAAGAACTCTAAGGACTGTCTGTAGTATCAGTAGTGCTATACTGGGGCTCTAAACTCATTTTCAGTTTATAACAACAGAGAATTTACACTTCCAGTCACTCAAAGTCCAGCCGTTCAGACCCAGACACAAGTTTAAACAGAAACGCTTGAAGATACGATGTACCGGGATACCGGACTTGCGTGACCATTACAGATAGTTTCACATTGGCTGATACAGTTGCGAATACAGCTGTTGCACATCTCATACGTTCACAAATACAGGTGATAACAGTTGAATATCAAACAGCTTCACCACCTTCAAGCCTCCGTACATGAAGGACACACCCCACTTCATGCATCCCTCCTGGAACAGATATGTTTCTTGTCCGAGTTGATCAGTTGGTTAAGCCAGTCAAACTCAACCGGTCTTGGAGTTCCCTTTTAAACTGATGTTGTTTTATCATTCACAGTCTGCGAGTCAGCTACTGTTGATTATGTGTGAGAATACTGATATGCACATTCCTGTTCTGGACAATCCAGACACTTTGGGTTCCCTCAGCTTTGATGCGGTAAAGTCCTCTAAGCGTGGGTTTTGTTCTTGAACTTGTTCCGCAATGAAACAGTCCAGCCAGTAGGAGGAGCTGTTGCGAAGAGCACAGAAGCTGCTGCTCAGTTCACTCTCCACAGTGGCGTAACACAGCTGAGCATCAGCGTAGCAGCGCATAGCGTACAGTACAGAGAATACAGTGCAAATCATACAGTACCGAATGTGGGCAGTTTAAACCGTGCCTTGTCACCTCAGCAAATCCTATATCCAGTGGGCCCTAGTACCAAAgaatagtttgtgtgtgtgtgttgagaaaGTTTTACAGCAGTAGATAACGCACGCACACGCAAATGCACACGCAGATGCACATACACACTTCACTTATACGGAATGTTCCCCTGCAGGGAGTGGCAGTGTGACAGTTAAGAGTCCGACGCAGCTGGCTTTAGCGCTTTTTAGCATGCCGCAGCCGCAGAAACCAAGGCAATGAATACTAACACTATTCCATGTGTACGGGTTACAATGTGTGTGAAACGAGCACACGaaattacactctacaacagcCTAGAACAAACTCGGAGACTGAACCCCTGGACAAACGCCTGGTCCTCCTGCTCTTCACTGTGCTGCGCACTCAGCCGTGTCCACTGGCAGGGTTATACAGATAACtcctgagataaaaaaaaatatataataaaaataaaacaaaataacaaaacaaacaaaaaactctaACACTAATCCAAGTTTCTTTTTCTTGCCTCCACTAGAGGGCGCCAGTGCTTCAACATGCTCTCGCCTCCATGGCTCCCACTAGAACATTTTGCAGTCACTTTCTCTCTTCACGACCAGGGTTGCAGAAAGTATCCTGGCTTGTGGACGGACGGTGATGTAGGTTCCTTAAGGCAAATGTTTTCTTCTGTCATGCTTTTACCAATTCGAACAACAGAATGGGGGTAACTTGGGTGGTGTCTTTCTCTCCTTGGCTGCAGTTTTCttctcgtttttttttttgttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89343 lncRNA upstream 2906 23316884 ~ 23323361 (+) False eps8
TU89331 lncRNA upstream 3171 23316884 ~ 23323096 (+) False eps8
TU89345 lncRNA upstream 99400 23226030 ~ 23226867 (+) True G66207
TU89293 lncRNA upstream 121560 23107886 ~ 23204707 (+) True G66183
TU89320 lncRNA upstream 136601 23184357 ~ 23189666 (+) True G66201
TU89476 lncRNA downstream 84051 23508975 ~ 23509533 (+) False G66305
TU89477 lncRNA downstream 84051 23508975 ~ 23509239 (+) True G66305
TU89506 lncRNA downstream 149179 23574103 ~ 23574333 (+) True G66334
XR_002650157.1 lncRNA downstream 169304 23594228 ~ 23598993 (+) False LOC111192880
TU89510 lncRNA downstream 169937 23594861 ~ 23595114 (+) True G66338
XM_022671538.1 mRNA upstream 3151 23222515 ~ 23323116 (+) True eps8
XM_022671537.1 mRNA upstream 3151 23222515 ~ 23323116 (+) False eps8
XM_022671540.1 mRNA upstream 3151 23222515 ~ 23323116 (+) False eps8
XM_022671539.1 mRNA upstream 3151 23222515 ~ 23323116 (+) False eps8
XM_022671543.1 mRNA upstream 3151 23222517 ~ 23323116 (+) False eps8
XM_015607512.2 mRNA downstream 26639 23451563 ~ 23544843 (+) False rerg
XM_007256037.3 mRNA downstream 42609 23467533 ~ 23548257 (+) True rerg
XM_007256038.3 mRNA downstream 273246 23698170 ~ 23720094 (+) True LOC103027234
XM_007239000.3 mRNA downstream 491382 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 491382 23916306 ~ 23953720 (+) False etv6
TU89299 other upstream 188313 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 188313 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 322846 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 377075 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1641433 21629862 ~ 21684834 (+) False gen1
TU89467 other downstream 19250 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 58409 23483333 ~ 23483933 (+) True G66303
TU89518 other downstream 273228 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 942568 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 943449 24368373 ~ 24383022 (+) True rpap3

Expression Profile