RNA id: TU89368


Basic Information

Item Value
RNA id TU89368
length 758
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id LOC111193001
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23396483 ~ 23400422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCCCTCAATTTATTAATCATTCCCTCGATCTATTTTACAGTTCGATTCAATTTGTTTCCtctatttaattaatcatttcaCTCTATTCATTGTTCCCTCGAtccgttcccctgttccctcgatccgttcccctgttccctcgttcccctgttccctcgttcccctgttccctagttccctcgttCCCCTTGTTCCCtggttcccctgttccctcctTCCCCCGTTCCCTCATTCCCCTGTTCCttcgttcccctgttccctggTTCCCTCGTTCCCCTTGTTCCTtggttcccctgttccctcgttcccctcttccctagttccctcgttacgttccctagttccctcgttacgttcccctgttccctcgttcccctgttccctctTCCCTAGttccccccgagttccccagtTCCCTCGttccccccgagttccccagtTTCCGAGTTCCCCAGTTTCCGAGTTCCCCAGTTTCCgagttcccccgttcccctgttccctcgatccgttcccctgttcccttgATCCATTCCGCGACGGCTCCTTTCTAATTCCTCGATTCTGTTGTTTCCTCAGTTCTTTTTCAGTTCCCTCAATCCCTGcaagcgaggcggacccctgcGCCCGGCCATACTAACGCGCTGAATTCTTCAGTCGTCACTTCTCTCCGCCTGCTGGTTGAAGTCCCTCTAGTGTCCGCGTTCTTCGTCCAGGCGCCCCTGTCTGCTGTGATGACCTTCGGTCCTGCCTGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89365 lncRNA upstream 720 23396483 ~ 23397609 (+) False LOC111193001
TU89370 lncRNA upstream 720 23396483 ~ 23397609 (+) False LOC111193001
TU89362 lncRNA upstream 2038 23395746 ~ 23396291 (+) True G66223
TU89343 lncRNA upstream 74968 23316884 ~ 23323361 (+) False eps8
TU89331 lncRNA upstream 75233 23316884 ~ 23323096 (+) False eps8
TU89476 lncRNA downstream 109555 23508975 ~ 23509533 (+) False G66305
TU89477 lncRNA downstream 109555 23508975 ~ 23509239 (+) True G66305
TU89506 lncRNA downstream 174683 23574103 ~ 23574333 (+) True G66334
XR_002650157.1 lncRNA downstream 194808 23594228 ~ 23598993 (+) False LOC111192880
TU89510 lncRNA downstream 195441 23594861 ~ 23595114 (+) True G66338
XM_022671543.1 mRNA upstream 75213 23222517 ~ 23323116 (+) False eps8
XM_015607512.2 mRNA downstream 52143 23451563 ~ 23544843 (+) False rerg
XM_007256037.3 mRNA downstream 68113 23467533 ~ 23548257 (+) True rerg
XM_007256038.3 mRNA downstream 298750 23698170 ~ 23720094 (+) True LOC103027234
XM_007239000.3 mRNA downstream 516886 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 516886 23916306 ~ 23953720 (+) False etv6
TU89299 other upstream 260375 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 260375 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 394908 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 449137 22939602 ~ 22949192 (+) False ccdc167
TU88777 other upstream 1713495 21629862 ~ 21684834 (+) False gen1
TU89467 other downstream 44754 23444174 ~ 23444677 (+) True G66296
TU89474 other downstream 83913 23483333 ~ 23483933 (+) True G66303
TU89518 other downstream 298732 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 968072 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 968953 24368373 ~ 24383022 (+) True rpap3

Expression Profile