RNA id: TU89474


Basic Information

Item Value
RNA id TU89474
length 581
RNA type TUCP
GC content 0.48
exon number 2
gene id G66303
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23483333 ~ 23483933 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcactcactcctgttactgcactcagtcctgttactggcactcattcctgttagtggcactcagtcctgtttaataaatcaataaaccaagGGACAACACTCACTGCTGTTAATGGCATTCAGTgcagttactggcactcattcctgttactggcactcattcctgttactgcactcattcctgttactgcactcagtcctgttactggcactcagtcctgttactggcactcactcctgttactgcactcactcctgttactggcactcattcctgttactggcactcagtcctgttattggcactcagtcctgttactggcactcactcctgttactgaactcactcctgttactggcactcagtcctgttactgacactcactcctgttactggcactcactcctgttactgcactcactcctgttactggcactcactcctgttactgcactcactcctgttactggcactcactcctgttactgcactcactcATGTtgctggcactcactcctgttactaaaactcagtGCTTTTActaaaactcattcctgttactggcagtcacatctgttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89349 lncRNA upstream 58409 23326267 ~ 23424924 (+) True G66210
XR_002650201.1 lncRNA upstream 82911 23396532 ~ 23400422 (+) True LOC111193001
TU89364 lncRNA upstream 83913 23396483 ~ 23399420 (+) False LOC111193001
TU89368 lncRNA upstream 83913 23398329 ~ 23399420 (+) False LOC111193001
TU89371 lncRNA upstream 83913 23398329 ~ 23399420 (+) False LOC111193001
TU89476 lncRNA downstream 25042 23508975 ~ 23509533 (+) False G66305
TU89477 lncRNA downstream 25042 23508975 ~ 23509239 (+) True G66305
TU89506 lncRNA downstream 90170 23574103 ~ 23574333 (+) True G66334
XR_002650157.1 lncRNA downstream 110295 23594228 ~ 23598993 (+) False LOC111192880
TU89510 lncRNA downstream 110928 23594861 ~ 23595114 (+) True G66338
XM_022671543.1 mRNA upstream 160217 23222517 ~ 23323116 (+) False eps8
XM_007256038.3 mRNA downstream 214237 23698170 ~ 23720094 (+) True LOC103027234
XM_007239000.3 mRNA downstream 432373 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 432373 23916306 ~ 23953720 (+) False etv6
XM_007239002.3 mRNA downstream 432373 23916306 ~ 23953720 (+) False etv6
XM_007239003.3 mRNA downstream 432373 23916306 ~ 23953720 (+) False etv6
TU89467 other upstream 38656 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 345379 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 345379 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 479912 22999370 ~ 23003421 (+) True c7h11orf98
TU89211 other upstream 534141 22939602 ~ 22949192 (+) False ccdc167
TU89518 other downstream 214219 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 883559 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 884440 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 884440 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 1034689 24518622 ~ 24526052 (+) True osgep

Expression Profile