RNA id: TU89477


Basic Information

Item Value
RNA id TU89477
length 222
lncRNA type intronic
GC content 0.50
exon number 2
gene id G66305
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23508975 ~ 23509533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTGCTTCACTGTGTAGCACCTGTTTGGCTGCCTATACCCTCTCCCTTCTCCCTGCTGctgcctgcctgcctgcatgCCATTGCCCTTTCCCTCTGCCTGCCTGCTACTTACCTGCTTGTGGCCTACTTACCTCCATCTTCAACATCTTCATTCATCTGGACCAAGGTATGAACAACAGCTGTACACAGTGTTTAAAGATAAGCGCGTGACAACCACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89349 lncRNA upstream 84051 23326267 ~ 23424924 (+) True G66210
XR_002650201.1 lncRNA upstream 108553 23396532 ~ 23400422 (+) True LOC111193001
TU89364 lncRNA upstream 109555 23396483 ~ 23399420 (+) False LOC111193001
TU89368 lncRNA upstream 109555 23398329 ~ 23399420 (+) False LOC111193001
TU89371 lncRNA upstream 109555 23398329 ~ 23399420 (+) False LOC111193001
TU89506 lncRNA downstream 64864 23574103 ~ 23574333 (+) True G66334
XR_002650157.1 lncRNA downstream 84989 23594228 ~ 23598993 (+) False LOC111192880
TU89510 lncRNA downstream 85622 23594861 ~ 23595114 (+) True G66338
TU89512 lncRNA downstream 85924 23595163 ~ 23599591 (+) True LOC111192880
TU89529 lncRNA downstream 308834 23818073 ~ 23820977 (+) True G66353
XM_022671543.1 mRNA upstream 185859 23222517 ~ 23323116 (+) False eps8
XM_007256038.3 mRNA downstream 188931 23698170 ~ 23720094 (+) True LOC103027234
XM_007239000.3 mRNA downstream 407067 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 407067 23916306 ~ 23953720 (+) False etv6
XM_007239002.3 mRNA downstream 407067 23916306 ~ 23953720 (+) False etv6
XM_007239003.3 mRNA downstream 407067 23916306 ~ 23953720 (+) False etv6
TU89474 other upstream 25042 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 64298 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 371021 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 371021 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 505554 22999370 ~ 23003421 (+) True c7h11orf98
TU89518 other downstream 188913 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 858253 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 859134 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 859134 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 1009383 24518622 ~ 24526052 (+) True osgep

Expression Profile