RNA id: XR_002650157.1


Basic Information

Item Value
RNA id XR_002650157.1
length 284
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC111192880
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23594228 ~ 23599591 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagacagacagatagaaagtaaaggATGCTTATCTGGCAGCCGTCAGAGCCGTGACCTGAAACGTGTGACATGGAAACAATGgcaaaaaaagttaccTGTATTGGCCACACAGCCACCATCCTTCTCCTgcttttttgagattttttttggtctagTTGAGACTTCAAGTCTTAAAGTCAGGTCTTCAATTTCCTCATGATGTCCCTCaaagtggaaactgacagctgaaatttctgagatagctttttgtatccttcctctaaaccatgatgttgaataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89506 lncRNA upstream 19895 23574103 ~ 23574333 (+) True G66334
TU89476 lncRNA upstream 84695 23508975 ~ 23509533 (+) False G66305
TU89477 lncRNA upstream 84989 23508975 ~ 23509239 (+) True G66305
XR_002650201.1 lncRNA upstream 193806 23396532 ~ 23400422 (+) True LOC111193001
TU89368 lncRNA upstream 194808 23398329 ~ 23399420 (+) False LOC111193001
TU89529 lncRNA downstream 219080 23818073 ~ 23820977 (+) True G66353
TU89572 lncRNA downstream 312835 23911828 ~ 23912211 (+) True G66382
TU89579 lncRNA downstream 377247 23976240 ~ 23977946 (+) True G66389
TU89679 lncRNA downstream 538912 24137905 ~ 24138185 (+) True G66472
TU89683 lncRNA downstream 587141 24186134 ~ 24186383 (+) True G66476
XM_007256037.3 mRNA upstream 45971 23467533 ~ 23548257 (+) True rerg
XM_015607512.2 mRNA upstream 49385 23451563 ~ 23544843 (+) False rerg
XM_022671545.1 mRNA upstream 271112 23222517 ~ 23323116 (+) False eps8
XM_007256038.3 mRNA downstream 99177 23698170 ~ 23720094 (+) True LOC103027234
XM_007239000.3 mRNA downstream 317313 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 317313 23916306 ~ 23953720 (+) False etv6
XM_007239002.3 mRNA downstream 317313 23916306 ~ 23953720 (+) False etv6
XM_007239003.3 mRNA downstream 317313 23916306 ~ 23953720 (+) False etv6
TU89474 other upstream 110295 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 149551 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 456274 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 456274 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 590807 22999370 ~ 23003421 (+) True c7h11orf98
TU89518 other downstream 99159 23698152 ~ 23710076 (+) False LOC103027234
XR_002650203.1 other downstream 768499 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 769380 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 769380 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 919629 24518622 ~ 24526052 (+) True osgep

Expression Profile