RNA id: TU89518


Basic Information

Item Value
RNA id TU89518
length 422
RNA type TUCP
GC content 0.56
exon number 2
gene id LOC103027234
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23698152 ~ 23720094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCAGAggagacacacacacccttatatatactctcacacacactcacacactcacactcagtcagagagagactcagcctcgagagagagagagagagagagagagagagagagacccgcACAGTTCTGAGTAACTCCTCCATCATGAAGCCTCGCTACCAGGTGCTGagcgcgctgctgctgctgtgcagtCTGCGGGAGGACCTGCTGACGGAGGGCGTGCTCGTGCGCGCCCGCGCACCCGCAGGACGCCTACTGCAACTCCGACATCGTGATCCGAGCCAAAGTGGTGGGGAAGAAGCCACTGAAGGACGGACCCTTTGGCACAATGCGCTACACAGTCAAGCAGATGAAGGCAAGTCAGAAGGAGTGTCGTGCTCCACGACACAGTCGAGTTACACAACTAATATATATCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89512 lncRNA upstream 98561 23595163 ~ 23599591 (+) True LOC111192880
XR_002650157.1 lncRNA upstream 99159 23594228 ~ 23598993 (+) False LOC111192880
TU89510 lncRNA upstream 103038 23594861 ~ 23595114 (+) True G66338
TU89506 lncRNA upstream 123819 23574103 ~ 23574333 (+) True G66334
TU89476 lncRNA upstream 188619 23508975 ~ 23509533 (+) False G66305
TU89529 lncRNA downstream 107997 23818073 ~ 23820977 (+) True G66353
TU89572 lncRNA downstream 201752 23911828 ~ 23912211 (+) True G66382
TU89579 lncRNA downstream 266164 23976240 ~ 23977946 (+) True G66389
TU89679 lncRNA downstream 427829 24137905 ~ 24138185 (+) True G66472
TU89683 lncRNA downstream 476058 24186134 ~ 24186383 (+) True G66476
XM_007256037.3 mRNA upstream 149895 23467533 ~ 23548257 (+) True rerg
XM_015607512.2 mRNA upstream 153309 23451563 ~ 23544843 (+) False rerg
XM_022671543.1 mRNA upstream 375036 23222517 ~ 23323116 (+) False eps8
XM_007239000.3 mRNA downstream 206230 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 206230 23916306 ~ 23953720 (+) False etv6
XM_007239002.3 mRNA downstream 206230 23916306 ~ 23953720 (+) False etv6
XM_007239003.3 mRNA downstream 206230 23916306 ~ 23953720 (+) False etv6
XM_015602945.2 mRNA downstream 316385 24026461 ~ 24117713 (+) True LOC103023565
TU89474 other upstream 214219 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 253475 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 560198 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 560198 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 694731 22999370 ~ 23003421 (+) True c7h11orf98
XR_002650203.1 other downstream 657416 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 658297 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 658297 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 808546 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 935650 24645726 ~ 24684580 (+) False lingo1

Expression Profile