RNA id: XM_007256038.3


Basic Information

Item Value
RNA id XM_007256038.3
length 3439
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC103027234
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 23698152 ~ 23720094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacccttatatatactctcacacacactcacacactcacactcagtcagagagagactcagcctcgagagagagagagagagagagagagagagagagacccgcACAGTTCTGAGTAACTCCTCCATCATGAAGCCTCGCTACCAGGTGCTGagcgcgctgctgctgctgtgcagtCTGCGGGAGGACCTGCTGACGGAGGCGTGCTCGTGCGCGCCCGCGCACCCGCAGGACGCCTACTGCAACTCCGACATCGTGATCCGAGCCAAAGTGGTGGGGAAGAAGCCACTGAAGGACGGACCCTTTGGCACAATGCGCTACACAGTCAAGCAGATGAAGATGTACAAAGGATTCAACAAAATGCAGCACGTCCAACACATCTACACAGATGCCTCAGAGAGCTTATGCGGAGTCAAGTTTGAAATCAACAAGTACCAGTACTTGATCACAGGCCGTGTGTATGATGGGAAGGTCTACACGGGGCTGTGTAACTTCAACGAGAGGTGGGAGCGTCTGTCCCTCGCCCAGAAGAAAGGAATCAACCATCGCTACCAGCTGGGCTGCAACTGCAGGatTAAGCCCTGTCACTACCTGCCCTGCTTTGTGACCTCAAAGAACGAGTGCCTGTGGACGGACATGCTGTCCCACTTCGGCTACCCTGGTTACCAGTCGCGCCACTATGCCTGCATCCAACAGAAAGAGGGCTACTGTAGCTGGTACCGGGGGATGATCTCACGTGACAAAACCATCGTCAACACCACTGACCCCTGAACACTCCCAGCACTTTCCACacactttccctctcttttaAAACCTGGCTTCTTTCTACTATCCCtcaaaccttcatttaaaaaaaaaaagttatccaTATGGAGACGTAGGTCAAGTCTTGCAGACTGCGGCAACTTTTACAGGTGCCTGTGAAAGCACTTTCAGTGTACACAATACCTGTGTTCTACTGCGTACGGTCACGCTGTggtcaccctacctgcactctGCTGTCCACAGAGACACGCTGAGCTGTTACCGCCCTCAGAAGGACACATTAAAGGGAGAGACAAGAGTTGTATCAGGGAAAAATCTTGCCattaaaataatcagaaaagCTGCCTTTAACTttaatactgtacatacagaaataataaattaagattatattgatttcttaaGTTTTAGCACTATATATTCCTTCAAAACTATTCAGAtcagattaaataaaatgaataaaaaaaggctTGTTCATAATCAAGAAATCTTCCCTTGCAATTTCTTGTGTCCCCCTTTAGGTCTTTTGAGAATGCACTAAACTTGCTTTCTAAACTGCTGGCGCTTTTTCAACATCACAGTTGCGTATAAGGTGAATGATACTTCCAGTGTTGTTCTATAAAGCAATAAGTGTTACATGCCGTATATAATCTCtggcaaagaaaaaataatgtattgtgcCAACAAACAGCGTCATTTAAAACAGCACACGTGATTCTCAACAACAGCGTTTTAAAAACCAATCAGAGGGCAGTGTTCATGCGAGGTAATAATTTATGAAAGCAATACTTTACGGTCCTCCCACAGAAGCACTTAGGTATTGTATTATAATGATTTTAGAGTTATATGAATAACTGTATGTGCGTATACACAGATATACAAATttccacaatatatatatactgtaatacagAGATATACAGTTCTCCACAGttcttgaggtctgaaaactacAGTTTTCACCCTCTCATTACCAGGCCTGGTAGAAAGTGGCCAACCATTTCCATTACCAGTCCAATTAGCCATCTGTAATAATTACAGTTTGAGATTTGAATACCTCTGCtgtaaactatatatttatgaAATCTCTGCTTGCCTCCTGCTTTGTGCTGTAGAGTTCAATTTTCATAGTATAATCGCATGTATTGAGGATGTATTTGTTTgaatattcacaaaaaaatctatcaaagatttctatatatatattttttacaagaaAATGCAGCAAAAATGAACCTTATAGCACAAATTTTGGggaacacttattttttttgagaGGGGCAATAGATgcaatttattttgtttctcttGCTGTTTGATATAAGCTAAGAAACAGTGACCTGACTGAAACCTCTGTTGTATGTCATGAGCACTAATAATGTTACAATGGATTATTACACCTTCTGAGTTAGTTTAAGGTTGGTTGACGGTGGTTCTCATTTTGGTCCTCAGAGACACCCCCAGTGGCTCACATTTTAGCTCTATGTGTTGGGATCTGGCACGTAGCCAAAATATCGATTGGTGTTGGGTGGTGGCCCTGagtgcagataaaaaaaaaagtactggtttacagtgtagaccACACAATTATCATCTGGCTTTTTTATTATGAACCTTTTTATTATGTACTTAGAATAAGATCACACATTTCATGCAAATAATATATGAAAAGCTGAAACACCGGAAATCAATGCCAGATATGTCTAATTACCAACAAAATACAGTGCCAATGCATCTTAAACTAGTAGTTATTGGTGTTAAGCAAATTGATGGTACGTCACTGCATAAACAGAGGTTTTAGCTCTAAAGTATTtctgtatatgtaaaatatattaaactatttcaaatgaaaagatgcAAATAATTGTGATTTGTCActaaccttttatttttatttttttattttttgagattATTCACAGTATCTTCAGTCCATTCCTCTGAAAGGGACTAAGGTGATTTGGGCCGGGATGACACGACAGACATAAACAATACTTATCAGCTACCCATTACCAAATTATTGTTTATCAATACTTTTGGAAAAAAGGTTTCAATCCAAGATCCTGGTGTACCCCTGTCCTGCATGTTTAGGTTAAGAGCTTTCTCTGCTCTAATAAACCCACTTTAATTAGGGGTTTATTAATGAGCTGGACAGTTTAATTAAACGTGTGGGGTCATTGAAAACACCAATGGCAGGGTTAAATCTAATAATCCACTACCACTGATCTGTTGTCGCAGTGTCATCGCTCATGTTCTGGACCACCATAGTCTCTGTCACTTTAATGTGGGTGGGTTGGGTGATGCTAATGTAAAATACTGTCTGCTTAACACGCACTCCAGTCAATCCAGTCCTGGATGTTTTTAGGGGAAAGGCTGAGAATGATCAGGAGAGACTTTATgtaaagtgagtgtgtgaggatgTGTGTATACACCGATTCCTAAGGGGTAAACAATTTCCCATAGGGGCTTACAGAaatgttttgatttttaatttgtgttttatatttttataataaagattTAATGAAAATTGCATTTGTGAACATGTCATATTTAACAAAATGTATGtcgatattttaaatataaaattccTATTTGAAATGCCTGTCTGAAACTGGACAGGATGactgtatatatgttatatCAGTTTCGAAATAAACAAATCATGTTTGTT

Function

GO: NA

KEGG:

id description
K16866 TIMP3; metalloproteinase inhibitor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89512 lncRNA upstream 98579 23595163 ~ 23599591 (+) True LOC111192880
XR_002650157.1 lncRNA upstream 99177 23594228 ~ 23598993 (+) False LOC111192880
TU89510 lncRNA upstream 103056 23594861 ~ 23595114 (+) True G66338
TU89506 lncRNA upstream 123837 23574103 ~ 23574333 (+) True G66334
TU89476 lncRNA upstream 188637 23508975 ~ 23509533 (+) False G66305
TU89529 lncRNA downstream 97979 23818073 ~ 23820977 (+) True G66353
TU89572 lncRNA downstream 191734 23911828 ~ 23912211 (+) True G66382
TU89579 lncRNA downstream 256146 23976240 ~ 23977946 (+) True G66389
TU89679 lncRNA downstream 417811 24137905 ~ 24138185 (+) True G66472
TU89683 lncRNA downstream 466040 24186134 ~ 24186383 (+) True G66476
XM_007256037.3 mRNA upstream 149913 23467533 ~ 23548257 (+) True rerg
XM_015607512.2 mRNA upstream 153327 23451563 ~ 23544843 (+) False rerg
XM_022671543.1 mRNA upstream 375054 23222517 ~ 23323116 (+) False eps8
XM_007239000.3 mRNA downstream 196212 23916306 ~ 23953720 (+) True etv6
XM_007239001.3 mRNA downstream 196212 23916306 ~ 23953720 (+) False etv6
XM_007239002.3 mRNA downstream 196212 23916306 ~ 23953720 (+) False etv6
XM_007239003.3 mRNA downstream 196212 23916306 ~ 23953720 (+) False etv6
XM_015602945.2 mRNA downstream 306367 24026461 ~ 24117713 (+) True LOC103023565
TU89474 other upstream 214237 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 253493 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 560216 23131094 ~ 23137954 (+) False crebl2
TU89300 other upstream 560216 23131094 ~ 23137954 (+) False crebl2
TU89229 other upstream 694749 22999370 ~ 23003421 (+) True c7h11orf98
XR_002650203.1 other downstream 647398 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 648279 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 648279 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 798528 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 925632 24645726 ~ 24684580 (+) False lingo1

Expression Profile