RNA id: TU89683


Basic Information

Item Value
RNA id TU89683
length 250
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G66476
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24186134 ~ 24186383 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtataaagtcagggttgggtagaatttctaagttgtaaaatcaatcatgggtaagcagcgcgacctctcaaccggaatagtggctcaaattcaagcccttcgccaacaaggcttgacccaaactaaaattgctgagcagctcggcatcagccagtcttccgtctgcaaagctctcaagaaaaactgcagcaagcgcaccaactgttccggcgtctgaaaaacttctgctcgcgacaacaagcagctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89679 lncRNA upstream 47949 24137905 ~ 24138185 (+) True G66472
TU89579 lncRNA upstream 208188 23976240 ~ 23977946 (+) True G66389
TU89572 lncRNA upstream 273923 23911828 ~ 23912211 (+) True G66382
TU89529 lncRNA upstream 365157 23818073 ~ 23820977 (+) True G66353
TU89512 lncRNA upstream 586543 23595163 ~ 23599591 (+) True LOC111192880
TU89690 lncRNA downstream 36622 24223005 ~ 24231186 (+) True G66480
TU89699 lncRNA downstream 137427 24323810 ~ 24324032 (+) True G66488
TU89739 lncRNA downstream 198536 24384919 ~ 24389774 (+) True G66514
TU89752 lncRNA downstream 222137 24408520 ~ 24414278 (+) True G66524
TU89753 lncRNA downstream 222137 24408520 ~ 24412117 (+) False G66524
XM_015602945.2 mRNA upstream 68421 24026461 ~ 24117713 (+) True LOC103023565
XM_015602946.2 mRNA upstream 68421 24026480 ~ 24117713 (+) False LOC103023565
XM_007239001.3 mRNA upstream 232414 23916306 ~ 23953720 (+) False etv6
XM_007229748.3 mRNA downstream 110534 24296917 ~ 24320066 (+) True lrig3
XM_022671556.1 mRNA downstream 181990 24368373 ~ 24383022 (+) False rpap3
XM_022671187.1 mRNA downstream 273020 24459403 ~ 24461001 (+) True LOC111192915
XM_007229740.3 mRNA downstream 324106 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA downstream 324107 24510490 ~ 24517356 (+) True LOC103034593
TU89518 other upstream 476058 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 702201 23483333 ~ 23483933 (+) True G66303
TU89467 other upstream 741457 23444174 ~ 23444677 (+) True G66296
TU89299 other upstream 1048180 23131094 ~ 23137954 (+) False crebl2
XR_002650203.1 other downstream 181109 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other downstream 181990 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other downstream 181990 24368373 ~ 24383022 (+) False rpap3
TU89793 other downstream 332239 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 459343 24645726 ~ 24684580 (+) False lingo1

Expression Profile