RNA id: TU89753


Basic Information

Item Value
RNA id TU89753
length 529
lncRNA type inter_gene
GC content 0.48
exon number 7
gene id G66524
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24408520 ~ 24414278 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCCATGATGCAACCAACTGACCAGATATCAaCTGTTTGTGAGTAGTGCATCCAGTTCAGGATGACCTCAGGTGCTCTGTACCACCGAGTTACCACATAACCCGTCATCTCTGAGTCAGCCTGCCGGGCCAGCCCAAAATCTAAAATCTTCAGCTCACAATTCTGATTTACAGCCAGGTTTCCTGGTTTGAGATCTCTGTGAATGATCCCAGCAGAATGAATATACTTCAGTCCCCTCAGCATTTGATATACCAGGAACTGCACCCTGTCTTCACACAATctctccatcttcatcagcttACCAAGATCTGTACCCATGAAGGGCATCACCAAGTAAAAATCCTGGAATCTGTCCAGTGATATTTCAGAAGTGAAGACGTCTAACAGCCCAATCACATTCTCGTGCTTCATGTGTTTTAACAGTCTCAGCTCTCTGTAAGCTCGCTTGGCGAAGAGTCTGGACTGGAATGGACGATGGAGCTTCTTGATGGCCACCCGCACACCTGCCTTGCGGTCAATGGCAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89739 lncRNA upstream 18746 24384919 ~ 24389774 (+) True G66514
TU89699 lncRNA upstream 84488 24323810 ~ 24324032 (+) True G66488
TU89690 lncRNA upstream 177334 24223005 ~ 24231186 (+) True G66480
TU89683 lncRNA upstream 222137 24186134 ~ 24186383 (+) True G66476
TU89679 lncRNA upstream 270335 24137905 ~ 24138185 (+) True G66472
TU89786 lncRNA downstream 93224 24505341 ~ 24505541 (+) True G66556
TU89790 lncRNA downstream 136100 24548217 ~ 24552340 (+) False osgep
TU89796 lncRNA downstream 137744 24549861 ~ 24552340 (+) False osgep
TU89814 lncRNA downstream 167036 24579153 ~ 24579353 (+) True G66577
TU89911 lncRNA downstream 306480 24718597 ~ 24718895 (+) True G66643
XM_022671556.1 mRNA upstream 25498 24368373 ~ 24383022 (+) False rpap3
XM_007229748.3 mRNA upstream 88454 24296917 ~ 24320066 (+) True lrig3
XM_015602945.2 mRNA upstream 290807 24026461 ~ 24117713 (+) True LOC103023565
XM_015602946.2 mRNA upstream 290807 24026480 ~ 24117713 (+) False LOC103023565
XM_007239003.3 mRNA upstream 454800 23916306 ~ 23953720 (+) False etv6
XM_022671187.1 mRNA downstream 47286 24459403 ~ 24461001 (+) True LOC111192915
XM_007229740.3 mRNA downstream 98372 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA downstream 98373 24510490 ~ 24517356 (+) True LOC103034593
XM_015605311.2 mRNA downstream 113250 24525367 ~ 24545081 (+) False osgep
XM_007229737.3 mRNA downstream 143484 24555601 ~ 24559622 (+) True LOC103033942
XR_002650203.1 other upstream 25498 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other upstream 25498 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other upstream 25498 24368373 ~ 24383022 (+) False rpap3
TU89518 other upstream 698444 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 924587 23483333 ~ 23483933 (+) True G66303
TU89793 other downstream 106505 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 233609 24645726 ~ 24684580 (+) False lingo1
TU90292 other downstream 1677715 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 3084678 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 5145019 29557136 ~ 29558666 (+) True G67459

Expression Profile