RNA id: TU89796


Basic Information

Item Value
RNA id TU89796
length 921
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id osgep
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24518622 ~ 24552340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACCTTGTGTATGATATTCCACAGCCTCCACCAGATGGTGACAGCTAAGGAGCAGCTCTTCAGAATTCTTGGGTTCCTTTGAGCACTGGCTTTGTGAAGATGTGGAGGTCGAAATAACAGAATTTTCAGCAGTTTCCTCTCCAGCTACTGGGTGCGGAGTTGCAGCTGGACTCCTTGCTGACATATCTTGAGGTGGGACTGAAGCTGCGTTTTCTACTGCTGGGCCATCGCTAATAAAACTGAGCCCCCACTGGTTCTGCAGAAGCACCTTGATACCTGGAGGTTCCTCCGCTACTCCTCCTGAAGTTCCACCCGCCTTCACTTTGGAGGCGTAGCTGACTGCAGGCTGCAGCTTTGCAGGGCTGTCCTTCACTGGGAAGGCAGGTGGAGGTTTAAGGGATGACAAAGTGTCTCCAACCCACcgttctttgtgtgtgtgggtctgaGAGGACCTGAGGTTTTTTTCACCGCCACGAGGCCCCATCCCGCCTCCGTCTTGCCGAGAGCCTCTGTTACCCCTGGCATGCACCCGCTGCTCTCTGTGCAAGCTAGAGAAGAAGACGTGTGTATGGCCAGTCCTGTGCGATTCATTAAAACTGTTTGAGGAAGTCTGACGGATGGACTTGCTATCCACTCCTGCTGAgcagcctcctcctcctccaccaccaccaccacagctgCCAGAGCCAGGGGAGAGGCGTCGGTTCCGAATGTGTGGTTCTGGCTTAGGTGCAGCGACGAGGACAGCAGGGTCACACAGGGGGTCCGACTCACACACTGCATTACTTGCCTCCCAGGTACCTGTTTTAATATGCATTCTGATCAGATGAATTCCCGACGGGCTGCTCTGTTTATGGCGGTGTTTTGTAGCGGGACAGCGTGCTGCTCTTCTCTCGCAGGGAGGAACCGGACTAAACGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89786 lncRNA upstream 44320 24505341 ~ 24505541 (+) True G66556
TU89752 lncRNA upstream 135583 24408520 ~ 24414278 (+) True G66524
TU89753 lncRNA upstream 137744 24408520 ~ 24412117 (+) False G66524
TU89739 lncRNA upstream 160087 24384919 ~ 24389774 (+) True G66514
TU89699 lncRNA upstream 225829 24323810 ~ 24324032 (+) True G66488
TU89814 lncRNA downstream 26813 24579153 ~ 24579353 (+) True G66577
TU89911 lncRNA downstream 166257 24718597 ~ 24718895 (+) True G66643
TU89924 lncRNA downstream 259075 24811415 ~ 24816069 (+) True G66656
TU89925 lncRNA downstream 275201 24827541 ~ 24827807 (+) True G66657
TU89926 lncRNA downstream 295309 24847649 ~ 24849015 (+) True G66658
XM_015605311.2 mRNA upstream 4780 24525367 ~ 24545081 (+) False osgep
XM_007229740.3 mRNA upstream 32505 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA upstream 32505 24510490 ~ 24517356 (+) True LOC103034593
XM_022671187.1 mRNA upstream 88860 24459403 ~ 24461001 (+) True LOC111192915
XM_022671556.1 mRNA upstream 166839 24368373 ~ 24383022 (+) False rpap3
XM_007229737.3 mRNA downstream 3261 24555601 ~ 24559622 (+) True LOC103033942
XM_007228543.3 mRNA downstream 46826 24599166 ~ 24647676 (+) True lingo1
XM_007228544.3 mRNA downstream 47335 24599675 ~ 24647676 (+) False lingo1
XM_022671560.1 mRNA downstream 636845 25189185 ~ 25300875 (+) True cspg4
XM_007228547.3 mRNA downstream 826097 25378437 ~ 25387120 (+) True snupn
TU89793 other upstream 23809 24518622 ~ 24526052 (+) True osgep
XR_002650203.1 other upstream 166839 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other upstream 166839 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other upstream 166839 24368373 ~ 24383022 (+) False rpap3
TU89518 other upstream 839785 23698152 ~ 23710076 (+) False LOC103027234
TU89825 other downstream 93386 24645726 ~ 24684580 (+) False lingo1
TU90292 other downstream 1537492 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 2944455 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 5004796 29557136 ~ 29558666 (+) True G67459
TU90953 other downstream 5033636 29585976 ~ 29592287 (+) True G67453

Expression Profile