RNA id: TU89825


Basic Information

Item Value
RNA id TU89825
length 1090
RNA type TUCP
GC content 0.37
exon number 2
gene id lingo1
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24599166 ~ 24684580 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAACATTTTACGGCAATTATATCTTAATCCCTGTTGATATTAATAGCCTtcaacactaggagggtaaagactagcctGTGCCACCTTGTCTTCATggtcagaggaaagtgcagcgccCCAGCTCCGATACATCAGTGTAGAATAGTAGAAGCCTGTTCTTACCAAAGTCACACTAggaatgatgtggggagagattGTCATCTATTCATTTACTCACCTCAGAGacagcaaggccagttgtgttCTTGTGtctgtagctctctctctctcagactccggctgctgatgaccttttttttgtttgtttgttttttttgttatttaatttacattctAGCTGAATTGGGAAATATAATAACAGCcgacacaaaacaaaactttttaacCTTAGtcttaaatcattatttttgttGCCAAATAATTTCCAGAATTCCAGAAAAATCACCCCTactgtctgactgtctgacAAACATTTGGCTGTGCaatactcattcactcactcattcatgtGGTTTTATATTGGTGTCAAGAAATTCAGCATTTTAAAACGTACAGATCCTGTTAGAAGTTGCTACACATTAAGATCTACTGAAGAGCGATTCCACAGAGAGCCTCGTTGTTGTTATTGACTTTCAATAACTATTCTTGCTGTTGTTTCATTTCCTTCCTGCGCTTTAGGCTTTTGGCACATTAGCCAGAGAGATGTAGATTATGAGAATTCCTTCATAAGGGCAAAGAGTGTGATGAGAATAGCATTAAGGAATGTGGTTGTCGCAGCTGTATCGTAGGGTTTGCTAATTTGCTAATTGCTAATGCTATTCCATGCTATGTTTATGTAACACATCAACCCCATGTTTGGTATCTATGGATTAAAAAGCtaatagttttatattaatattccaTTGTACATCACTGACTTGTCCATGTCGTTGCAGATGTGTAagtatgtatgagtgtgtgtgtgtgtgtgactgagtaaaaaagaaaaagaaggaatatGTTAATGTGCTTGACAACCCTGACATGTTTCAATGCTGCCTCTCTACCAGTTTAttggtccaaaaaaaaaacagtttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89814 lncRNA upstream 66373 24579153 ~ 24579353 (+) True G66577
TU89790 lncRNA upstream 93386 24548217 ~ 24552340 (+) False osgep
TU89796 lncRNA upstream 93386 24549861 ~ 24552340 (+) False osgep
TU89786 lncRNA upstream 140185 24505341 ~ 24505541 (+) True G66556
TU89752 lncRNA upstream 231448 24408520 ~ 24414278 (+) True G66524
TU89911 lncRNA downstream 34017 24718597 ~ 24718895 (+) True G66643
TU89924 lncRNA downstream 126835 24811415 ~ 24816069 (+) True G66656
TU89925 lncRNA downstream 142961 24827541 ~ 24827807 (+) True G66657
TU89926 lncRNA downstream 163069 24847649 ~ 24849015 (+) True G66658
TU89955 lncRNA downstream 404703 25089283 ~ 25089549 (+) True G66685
XM_007229737.3 mRNA upstream 86104 24555601 ~ 24559622 (+) True LOC103033942
XM_015605311.2 mRNA upstream 100645 24525367 ~ 24545081 (+) False osgep
XM_007229740.3 mRNA upstream 128370 24510489 ~ 24517356 (+) False LOC103034593
XM_007229739.3 mRNA upstream 128370 24510490 ~ 24517356 (+) True LOC103034593
XM_022671187.1 mRNA upstream 184725 24459403 ~ 24461001 (+) True LOC111192915
XM_022671560.1 mRNA downstream 504605 25189185 ~ 25300875 (+) True cspg4
XM_007228547.3 mRNA downstream 693857 25378437 ~ 25387120 (+) True snupn
XM_007228548.3 mRNA downstream 709855 25394435 ~ 25423664 (+) True ptpn9
XM_022671561.1 mRNA downstream 742157 25426737 ~ 25447821 (+) False sin3a
XM_022671563.1 mRNA downstream 744314 25428894 ~ 25449256 (+) True sin3a
TU89793 other upstream 119674 24518622 ~ 24526052 (+) True osgep
XR_002650203.1 other upstream 262704 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other upstream 262704 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other upstream 262704 24368373 ~ 24383022 (+) False rpap3
TU89518 other upstream 935650 23698152 ~ 23710076 (+) False LOC103027234
TU90292 other downstream 1405252 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 2812215 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 4872556 29557136 ~ 29558666 (+) True G67459
TU90953 other downstream 4901396 29585976 ~ 29592287 (+) True G67453
TU91186 other downstream 5603224 30287804 ~ 30288744 (+) False LOC111193014

Expression Profile