RNA id: TU89991


Basic Information

Item Value
RNA id TU89991
length 365
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G66712
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 25306619 ~ 25306983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GcataggtcggcaataggcggcccgcgggccagatgcggcccgcaagcaagaaacatctggcccggttgaactataatgaaaaaaaaaatcggactgtccgtcttaaaaatgctctttatttagaaacttaattttccaaaacagaaaaatttattaaagatttttgatagagccacgggctgttagataactgctagcttctttattctgtttttttttttttttattcgtttggtttttttttatttaacaaacaggtatatcattaatagcgcccccaatggtcagtccacagatttcacccacatcagcccacttgaatgtctgcttgtcattttaagagcgcCCTCCCGCCACCGcgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89978 lncRNA upstream 7070 25298911 ~ 25299549 (+) False cspg4
TU89988 lncRNA upstream 47046 25258379 ~ 25259573 (+) True G66710
TU89976 lncRNA upstream 133648 25172631 ~ 25172971 (+) True G66698
TU89963 lncRNA upstream 196606 25107586 ~ 25110013 (+) True G66692
TU89960 lncRNA upstream 204237 25101087 ~ 25102382 (+) True G66689
TU89993 lncRNA downstream 21798 25328781 ~ 25334442 (+) True G66714
TU89998 lncRNA downstream 28352 25335335 ~ 25340456 (+) True G66718
TU90024 lncRNA downstream 171877 25478860 ~ 25519547 (+) True G66739
TU90033 lncRNA downstream 253511 25560494 ~ 25561181 (+) True G66748
TU90040 lncRNA downstream 263855 25570838 ~ 25572159 (+) True G66755
XM_022671560.1 mRNA upstream 5744 25189185 ~ 25300875 (+) True cspg4
XM_007228543.3 mRNA upstream 658943 24599166 ~ 24647676 (+) True lingo1
XM_007228544.3 mRNA upstream 658943 24599675 ~ 24647676 (+) False lingo1
XM_007229737.3 mRNA upstream 746997 24555601 ~ 24559622 (+) True LOC103033942
XM_015605311.2 mRNA upstream 761538 24525367 ~ 24545081 (+) False osgep
XM_007228547.3 mRNA downstream 71454 25378437 ~ 25387120 (+) True snupn
XM_007228548.3 mRNA downstream 87452 25394435 ~ 25423664 (+) True ptpn9
XM_022671561.1 mRNA downstream 119754 25426737 ~ 25447821 (+) False sin3a
XM_022671563.1 mRNA downstream 121911 25428894 ~ 25449256 (+) True sin3a
XM_022671562.1 mRNA downstream 123668 25430651 ~ 25447821 (+) False sin3a
TU89825 other upstream 622039 24645726 ~ 24684580 (+) False lingo1
TU89793 other upstream 780567 24518622 ~ 24526052 (+) True osgep
XR_002650203.1 other upstream 923597 24367492 ~ 24383022 (+) False rpap3
TU90292 other downstream 782849 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 2189812 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 4250153 29557136 ~ 29558666 (+) True G67459
TU90953 other downstream 4278993 29585976 ~ 29592287 (+) True G67453
TU91186 other downstream 4980821 30287804 ~ 30288744 (+) False LOC111193014

Expression Profile