RNA id: XM_022671188.1


Basic Information

Item Value
RNA id XM_022671188.1
length 847
RNA type mRNA
GC content 0.58
exon number 10
gene id LOC111192916
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 26080452 ~ 26092119 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGAGCCGGGGACGCTCTGACCGGCGATGTGCACGAGTTTCAGCAGCGCCTGCTGGACCCAGAGACAAAAACATGGACCAGAACCCAAATACTGGGACGCTTCAGCTGCTGGAAAAACAGTTTACAAgtacaggaggaggaggaggaggttcaGATAGAGAGAGGCTGAAGgttACTGTAGCGGCTGAGGGAGCTCACCGGTCAGGTATGGATCCCCAGTGGAGGAGCGAACCTCTTCCAATAGTGGCGCAGTCAGGAGACTTTTCTTTCAGGACTCGTCCTGTGTCTCCGTGGCAGGGTGATGAGCCAGCCGCCTGGGAGGAGCCCCCGCCGTGTCAGCCCGGGTCTCTCGAGATGAAGCGGCGGGCCCACATTAAGATGTGGATAGAAGGTCAGCTGGAGGGACTCCTGCCCACCTCCCACCCAGAGTCTCCATTGCCTTCAACCACACCTGCAAGGTATGGCTGCAAGACTCTGGTGGCGATTGCGGAGGCAGAACCCTGGAACAGGCTGAACACTGCTGGTCCAGTTGCACAGTGTGAGGAAGCCCGGATCGCGTCCCTCACCACCACCTACCCCCCGGAGACATTCAGCCAgTCAGATGGCCCAATGCTGGTGGCAGAGGCGGATCCCTCTTACAGGCTCGACACCACTGGACCAGTGCCTAGGATTATCCCAGGTCCAGCTGCACAGGCTGTGGCTGACTTGGAGGACGACAGTGGAGAGGAGGAGTTCCTGGAGCAAGCTCCTATAACACAGTGGGAGGAAGCAGAGGTAGCGTCGCTCACCACCAACCTTCCACTCGGAGACATCCAGCAGTAAGTCACTGCACTATTGCCCATCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90172 lncRNA upstream 9297 26025980 ~ 26071155 (+) True G66844
TU90186 lncRNA upstream 309691 25737387 ~ 25770761 (+) True G66854
TU90183 lncRNA upstream 364214 25715976 ~ 25716238 (+) True G66851
TU90156 lncRNA upstream 391217 25688404 ~ 25689235 (+) True G66842
TU90151 lncRNA upstream 447369 25632793 ~ 25633083 (+) True G66837
XR_002650159.1 lncRNA downstream 81 26092200 ~ 26093105 (+) True LOC111192883
TU90302 lncRNA downstream 89 26092208 ~ 26093100 (+) False LOC111192883
TU90326 lncRNA downstream 61296 26153415 ~ 26153644 (+) True G66982
TU90331 lncRNA downstream 105302 26197421 ~ 26198071 (+) True G66987
TU90335 lncRNA downstream 105302 26197421 ~ 26197718 (+) False G66987
XM_015602020.2 mRNA upstream 11060 26043247 ~ 26069392 (+) True nup107
XM_022671570.1 mRNA upstream 55035 25704277 ~ 26025417 (+) False LOC103027045
XM_007241019.3 mRNA downstream 12638 26104757 ~ 26118299 (+) False mdm2
XM_007241018.3 mRNA downstream 15253 26107372 ~ 26118299 (+) True mdm2
XM_007235090.3 mRNA downstream 1868598 27960717 ~ 27981189 (+) True LOC103045890
XM_007235084.3 mRNA downstream 1933758 28025877 ~ 28031998 (+) False tmem138
XM_007235085.3 mRNA downstream 1933796 28025915 ~ 28031998 (+) True tmem138
TU89825 other upstream 1395872 24645726 ~ 24684580 (+) False lingo1
TU89793 other upstream 1554400 24518622 ~ 24526052 (+) True osgep
XR_002650203.1 other upstream 1697430 24367492 ~ 24383022 (+) False rpap3
XR_002650161.1 other downstream 1404676 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 3465017 29557136 ~ 29558666 (+) True G67459
TU90953 other downstream 3493857 29585976 ~ 29592287 (+) True G67453
TU91186 other downstream 4195685 30287804 ~ 30288744 (+) False LOC111193014
TU91317 other downstream 4506482 30598601 ~ 30600595 (+) True G67690

Expression Profile