RNA id: TU90535


Basic Information

Item Value
RNA id TU90535
length 472
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G67154
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 27591297 ~ 27591768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aataataataatactttatttttatatagcgcttttctaaAACCCAAAGACGCTTACAGTCATCATTTGTGaaaacaaatagaaacattacACAACAAGTGGTGACAGACAATCAACATAGTACGAGAACAGACAGCAGGGATAAGTGGTATAGTACATTAAACAGAGGGAAGGCCGTAGGCAAGAGAAAAGAGGTGAGTCTTGAGTGTAGATTTGAACaaggaaagagaggaggatTGTTTGACCACAGATGGGAGAGAATTCCATAGTTGAGGAGCAAGTCTGGAAAAAGCCCGATCACCAAAGCCACGGAGTTTAGAGGCTGGGACTTTAAGAAGTCCAGCAGTAGCAGACCTAAGGGATCGAGATGGTCTGTAAGGAAGAAGGAGGTTTGACAGATAAGGAGGTGCAAGATTATTTAATGCCTTATAGGTAAGTAAGAGAATCTTGAATTGAATCCTGTATTTAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90532 lncRNA downstream 108455 27482499 ~ 27482842 (-) True G67151
TU90531 lncRNA downstream 126808 27464256 ~ 27464489 (-) True G67150
TU90511 lncRNA downstream 215576 27372810 ~ 27375721 (-) True G67134
TU90510 lncRNA downstream 246504 27343425 ~ 27344793 (-) True G67133
TU90507 lncRNA downstream 279225 27307096 ~ 27312072 (-) True G67130
TU90546 lncRNA upstream 93258 27685026 ~ 27685440 (-) True G67165
TU90626 lncRNA upstream 301740 27893508 ~ 27893784 (-) True G67228
TU90651 lncRNA upstream 440953 28032721 ~ 28035920 (-) False tmem258
TU90672 lncRNA upstream 625103 28216871 ~ 28220848 (-) True G67254
TU90726 lncRNA upstream 808016 28399784 ~ 28466660 (-) True G67294
XM_022671585.1 mRNA downstream 204817 27176416 ~ 27386480 (-) False celf2
XM_022671593.1 mRNA downstream 290511 27176416 ~ 27300786 (-) False celf2
XM_022671591.1 mRNA downstream 290511 27176416 ~ 27300786 (-) False celf2
XM_022671586.1 mRNA downstream 290511 27176416 ~ 27300786 (-) False celf2
XM_022671582.1 mRNA downstream 290511 27176416 ~ 27300786 (-) False celf2
XM_022671615.1 mRNA upstream 341634 27933402 ~ 27959414 (-) True LOC103046202
XM_022671617.1 mRNA upstream 389500 27981268 ~ 27997241 (-) False LOC103045388
XM_022671616.1 mRNA upstream 389500 27981268 ~ 27997075 (-) True LOC103045388
XM_007235088.3 mRNA upstream 389500 27981268 ~ 27993820 (-) False LOC103045388
XM_007235089.3 mRNA upstream 389500 27981268 ~ 27993818 (-) False LOC103045388
TU89906 other downstream 2929395 24660024 ~ 24661902 (-) True G66642
TU89874 other downstream 3083016 24507834 ~ 24508281 (-) True G66619
TU89155 other downstream 5299615 22290685 ~ 22291682 (-) True G66081
TU88823 other downstream 5906469 21629958 ~ 21684828 (-) True G65803
TU90658 other upstream 529494 28121262 ~ 28132779 (-) False LOC103041081
TU90659 other upstream 529494 28121262 ~ 28132779 (-) True LOC103041081
TU90660 other upstream 529494 28121262 ~ 28132779 (-) False LOC103041081
TU90661 other upstream 529494 28121262 ~ 28132779 (-) False LOC103041081
XR_002650206.1 other upstream 1851588 29443356 ~ 29467227 (-) False fuk

Expression Profile