RNA id: TU91223


Basic Information

Item Value
RNA id TU91223
length 426
lncRNA type intronic
GC content 0.55
exon number 1
gene id G67629
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30277163 ~ 30277588 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gccgagtggtccagcagtctaaagcgctgccactatgagcaggaggttgccggttcgaaccccagctcatgcagctttgccatcaagctgccggcgttagagggagcaaaattggccttgctccctctgggtgggtagatggcgctctttccccacatcactcctacggtgatgtctccagcacagggcgtctgtgagctgatgtaccagagccgagccgctgtgctctcctccaagcgcgctggctgctcggcaatgctacatcagcagcagctcgaaaagaagcggtggctgacttcacatgtatcagaggaggcatgtgttagtcttcaccctcctggtgtgttgaggtatcactagtgatagggggagtcctaatgaatgggttgggtaattggttgtgtaaattggggagaaaatgggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91222 lncRNA downstream 40448 30233873 ~ 30236715 (-) True G67628
TU91150 lncRNA downstream 211469 30065359 ~ 30065694 (-) True G67575
TU91147 lncRNA downstream 236675 30040265 ~ 30040488 (-) True G67572
TU91141 lncRNA downstream 341219 29935705 ~ 29935944 (-) True G67566
TU91106 lncRNA downstream 553075 29719229 ~ 29724088 (-) True G67537
TU91241 lncRNA upstream 40302 30317890 ~ 30328126 (-) True G67640
TU91283 lncRNA upstream 146996 30424584 ~ 30425454 (-) True G67672
TU91287 lncRNA upstream 150370 30427958 ~ 30428487 (-) True G67674
TU91289 lncRNA upstream 169152 30446740 ~ 30446942 (-) True G67675
TU91290 lncRNA upstream 169969 30447557 ~ 30468713 (-) True G67676
XM_007245017.3 mRNA downstream 4655 30236929 ~ 30272508 (-) False LOC103043802
XM_007245016.3 mRNA downstream 4655 30236929 ~ 30272508 (-) False LOC103043802
XM_022671646.1 mRNA downstream 4781 30236929 ~ 30272382 (-) False LOC103043802
XM_022671642.1 mRNA downstream 432556 29835405 ~ 29844607 (-) False hmg20a
XM_007235037.3 mRNA downstream 432564 29834082 ~ 29844599 (-) False hmg20a
XM_022671648.1 mRNA upstream 59949 30337537 ~ 30371368 (-) True irf5
XM_022671647.1 mRNA upstream 99593 30377181 ~ 30406541 (-) False LOC103025989
XM_007245042.3 mRNA upstream 104134 30381722 ~ 30406547 (-) True LOC103025989
XM_022671649.1 mRNA upstream 148871 30426459 ~ 30473893 (-) True LOC103025686
XM_007245010.3 mRNA upstream 320780 30598368 ~ 30600653 (-) False atp6v1f
XR_002650206.1 other downstream 809936 29443356 ~ 29467227 (-) False fuk
TU90658 other downstream 2144384 28121262 ~ 28132779 (-) False LOC103041081
TU91366 other upstream 320807 30598395 ~ 30600908 (-) True atp6v1f
TU91422 other upstream 525122 30802710 ~ 30805567 (-) True G67755
TU91536 other upstream 698289 30975877 ~ 30992883 (-) True G67830
TU91559 other upstream 803206 31080794 ~ 31091017 (-) False tmem60
TU91562 other upstream 803206 31080794 ~ 31091017 (-) False tmem60

Expression Profile