RNA id: TU91290


Basic Information

Item Value
RNA id TU91290
length 364
lncRNA type intronic
GC content 0.56
exon number 2
gene id G67676
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 30447557 ~ 30468713 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATCATTAGtgatacctcaacacaccaggagggtgaagactaacacatgcttcctctgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgtagcattgccgagcagccagcgcgcttggaggaaagcacagcggctcggctccggtacatcagctcacagacgccctgtgctgcagacatcaccatagaagtgatgtggggaaagagcgccatctacccacccagagggagcagagccaattttgctccctctaacgccggcagcttgatggcaaagctgcatgagctggggttcgaacctgcgacctcctgctcatagtggcagcgcttaagaccgctggaccactcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91289 lncRNA downstream 615 30446740 ~ 30446942 (-) True G67675
TU91287 lncRNA downstream 19070 30427958 ~ 30428487 (-) True G67674
TU91283 lncRNA downstream 22103 30424584 ~ 30425454 (-) True G67672
TU91241 lncRNA downstream 119431 30317890 ~ 30328126 (-) True G67640
TU91223 lncRNA downstream 169969 30277163 ~ 30277588 (-) True G67629
TU91295 lncRNA upstream 16939 30485652 ~ 30485914 (-) True G67679
TU91302 lncRNA upstream 29008 30497721 ~ 30498247 (-) True G67682
TU91305 lncRNA upstream 48609 30517322 ~ 30523797 (-) False G67683
TU91306 lncRNA upstream 48609 30517322 ~ 30525094 (-) True G67683
TU91414 lncRNA upstream 290186 30758899 ~ 30759762 (-) False LOC111192887
XM_007245042.3 mRNA downstream 41010 30381722 ~ 30406547 (-) True LOC103025989
XM_022671647.1 mRNA downstream 41016 30377181 ~ 30406541 (-) False LOC103025989
XM_022671648.1 mRNA downstream 76189 30337537 ~ 30371368 (-) True irf5
XM_007245016.3 mRNA downstream 175049 30236929 ~ 30272508 (-) False LOC103043802
XM_007245010.3 mRNA upstream 129655 30598368 ~ 30600653 (-) False atp6v1f
XM_007245009.3 mRNA upstream 137759 30606472 ~ 30611944 (-) True LOC103041847
XM_022671651.1 mRNA upstream 155911 30624624 ~ 30642727 (-) False dennd6b
XM_007245007.3 mRNA upstream 155911 30624624 ~ 30642223 (-) True dennd6b
XM_007245004.3 mRNA upstream 202621 30671334 ~ 30679232 (-) True fam3c
XR_002650206.1 other downstream 980330 29443356 ~ 29467227 (-) False fuk
TU90658 other downstream 2314778 28121262 ~ 28132779 (-) False LOC103041081
TU91366 other upstream 129682 30598395 ~ 30600908 (-) True atp6v1f
TU91422 other upstream 333997 30802710 ~ 30805567 (-) True G67755
TU91536 other upstream 507164 30975877 ~ 30992883 (-) True G67830
TU91559 other upstream 612081 31080794 ~ 31091017 (-) False tmem60
TU91562 other upstream 612081 31080794 ~ 31091017 (-) False tmem60

Expression Profile