RNA id: XM_007228546.3


Basic Information

Item Value
RNA id XM_007228546.3
length 6473
RNA type mRNA
GC content 0.43
exon number 2
gene id snx33
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 25336717 ~ 25377155 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCATTGTATTCTCCTCACGTCATGGAAAAAGTTGGGTTACTTCTTTGCTGAAGCTGAAGGGATATAGGgtcttcagagagagagagaggggaccGGGGGTCCTGACCTCAGAGCAGCACGAGATCAGATATGAGGACAGGTCGAGTCTGAGAAAGCTGTTGTTTTGTTGGGGAAAATGGAGCGGGCTGGTGACGGAATGAGGCTCGAGCCCCGGGATGACTGTCTGTCTTCATCATTTCTGtctttgtgctgctgctgctgctgagataATGTTTTGATCTGAGgcgcgcgcgcgcgtgtgtgtatgggtgtgtgtgtgtgaatatatatgtgtatatgtgtttgagAGAGGAGGGCAcggctttgtgttttttttctccttcctcTTCCGAGGAGACCTGTAAACACTTACCACAGGATTACAGCAGCACGGCGGAGATCTGCTGCTcctgaactgaactaaactgaactgagctgctgctgccgggAGAGTTATAGTTCAGTTAGCCGGTGTTTAAACAGCCGAGCGGAGGATTTGTGTTCGCCTGCTGCAGGAACCAAACACACAGGGGAGGTGGATTTGGGCGACCTTtggatttaaaacacattttttttggacTGAATGCTGAATTGACTTGGTATGATAACTGGAACTTCACTCACTAGCTTAGGAATGTGCTAACTAACTGTGACTGCGGGGTATTAAAGatgtagttagttagctagcaagtTGTTTAGCTAACACTTGACCAAGATGAACGGTTAGGAAGCTTTTGGATCACTGTTGTTTAAAATAAGAACCGGTCCTGGAGCTATTGTTATAccattacaattaaaatactgcagacattatgtttttttattaacatttaacacACTGTACAAAGCTGCTTTGTTCTGGCTTTTGTATCTTAAGCCTAAACCCAACTTGATATAGGTCACTTGATAGGCACCAAAgacctagctagttaactagttaagtaACTACCTAAGTAGCCTGCCTAATTTGTGGGATtatttagggttagggtgtaGTTAGCAAGCTATCTACTTTTCTTTGTATACAGGTTAGGCTATGTGCAGACTACACTTTACTGAGTGTTCAGCACAATGGAAGGGAACTCTACTCCAGCCAGTAATCAAGTAAGGCTTTGagttgtgctgtgtgtgtttagtttttttgtttacagttgTTGTGTAACTTCATCTGAGATGAGTTGAATCACCAGAGAGACTAAAGGAAATTGATCTTGTGCCACAGTTTATTTTCCCCTGTCTTTTGGCATCAGACACAGTCTTGCTTTCTGGCATCAAAACAAGTAAAAATGTCACTGAAGGCTAAAGCACTTTACACTTTCCAAAGTGAGAACAAGGAGGAGATCAGCATCCAGGAGAACGAGGAGCTGCTAATTTTTGAAGAGAACTCAGTCGACGGCTGGTTGCGAGGGGAGAACAGTCGTGGGGAGAGAGGCCTGTTCCCAGCCACTTATGTGGAGATCATTAGGCCACGTTCCAACTCCAACCTGACTGACTGCTCCCTCAGCCCTGCGGGCTCACCTGGCAAGGACTTGCCTTACTTCAACACCACCACCTGCTATGACGATGATGACGACGACTGGGATGACTGGGACGACAGCTCGACGGTGGTCGAGGACGAGGACCCTCGCAGAGCGGTGGGTGCGAACGGTCATGCTCACCAAAGTGGGTATGCCAACCCCAACGTGCACTACCGTGCCAAGCCCCACATGGAGAGGCAAGACAGCATCTCCAGCTCCAGGAAAGGCAGCATGGTGGGCCGCAACCTCAATCGCTTCTCCAGTTTCGTGCGCTCAGGTGTGGAGGCATTCGTCCTTGGCGATGTGCCGATGATGGCCAAGATAGCCGAAGCCTACAGCATAGAAATGGGCCCTAGGGGGCCTCAGTGGAAAGAGAGCCCGCAGCCTTTCTGCTGCTCTGTTGAGGACCCCACCAAACAAACAAAGTTCAAAGGCATTAAGACTTATATTTCGTACCGGGTCACACCCAGCCACACTGGCAGGCCTGTGTATCGCCGCTACAAGCACTTCGACTGGCTGTACAACCGCCTGCTGCACAAGTTCACCGTCATCTCTGTTCCACACCTGCCTGAGAAGCAGGCCACAGGGCGTTTTGAGGAGGACTTcatagagaagaggaagaggcgGCTTATCCTATGGATGGATCACATGACCAGCCACCCAGTGCTGTCCCAGTACGAGGGCTTCGAACATTTCCTCATGTGTGGAGATGACAAGCAGTGGAAGCTGGGTAAACGGCGGGCAGAGAAGGACGAGATGGTGGGGGCTCACTTCATGCTCACGCTTCACATCCCTAATGAGCACCAGGACCTTCAGGACGTGGAGGAGCGCATTGACACATTCAAGTCCTTTGCCAAGAAAATGGACGACAGTGTGCTGCAGTTGACACACGTGGCCTCCGAGCTCGTACGCAAACATCTTGGAGGCTTCCGGAAGGAGTTCCAGAGACTAGGGAACTCCTTCCAGTCCATCAGCCAAGCGTTCATGCTGGATCCCCCATACAGCTCTGATGCCTTGAACAACGCCATCTCGCACACTGGACGGACATATGAGAACATCGGGGAGATGTTCGCAGAGCAGCCCAAGTTCGACTTGTTTCACATGCTGGACAAACTCTCGCTGTACCAGGGCTTGCTGTCCAACTTCCCAGATATCATCCATTTACAGAAAGGAGCTTTTGCGAAGGTGAAGGAGTCGCAGCGCATGAGTGACGAGGGGAAGATGGATCAGGACGAGGCGGATGGTATTCGGAAGCGCTGCAGGACAGTGGGCTTCGCCCTGCAGGCAGAGATGAACCACTTCCACCAACGCAGGGAGGTGGACTTTAAGGAGATGATGCAGGCCTACCTCCGCCAGCAGATCGCCTTCTACCAGCGCGTGGGCCAGCAGCTGGAGAGGACCCTCCACATGTACGACAACCTTTAGAATACGAGCAGGCCTTCAGAAGTGTTGGAAACATCTGAAACTTTGTTGATCCGCACATTCTGTGGAGAATGTGTCCCGCTTATTTGTTCTGTAACTCGAAGGTTTACAAAGACGATCCAGCTTAGAGACGACGCGTGACTTAATTCAGAGTCATGTCTTAAGTTCATGGATTTAACAGAGATTTTGGGACTTGAGGAGATGGTCAGACttgagagagaataagaatgCACATGAGGACCAAGCACTAGCTCATGCACTTAAAAATGTCACTTTCTTGGCTGCCTTTAATAGCCAAAACACAAAGAATTCCAGGGACTTGCACAGTTCATGTTGCCttgatgaaaaaaacaaaacaaacaaaacaatatctACGTAATTGTATCTCTCATCCTATTTTGTTAcacatattacatttaatttaagcgTATTTGCTAAGTAAAGTAAGTCCTTAGGTTATGATTTGTACTCTTGACCAATTGTGACCTCCCAGACTCAGGTTGAGTTACTTTTCTTGAGCAAGGTCTTGTTTCAAGCCATTATCGTCCCTGTTAGTGTCGTCTTTATTGAGCAGGCTCTGCAGGTGCCAGAGCTGTTCTGTTCCAGACTATACAAAGCTACACTTCCCTCAGTTGAAACCTGATGACTCTCTTTTGGTAatactacaaaactacaaagaaaTTGTTACGTTTACTTAAggtctgttttttctttctggGACAAATCGGGTGAAATCTTGTTGCCTTGCCTGTTTCTGGCCAACGTGTCCACCAGTTAAAATGTCTACCTGCCACAGAAACATTCCAATAACACCAGCCTTTCAGCTAACCCATTCCGGGAACACTTTGAGAGTATTCCGACAGCACAGCGCCTCCAaaacaaattccaaatgaatGTCCTAACAGCAATGCTGGCACTCTGAAAGTGATTTTAGAAATGAACCCTGTATTTGTCGAAAGGTTTATTTTGATTTAGCGTGATCTGGTTGTAGAGCAGGACGAACACAAAGGGACTCCCCCCTCTGCTCTTTTAGGAACTGCCAGAGGGTACTCGCAAttttagtgttgttgttttttttattatcaagaAATGTAGGTTCTGCTTCAGGTTATTTTTAAGAGGATTTTTATACATAGACTTTAATAGAGGGGTGGATGGGGTAGAGCATGTCAGAATGATTCTTAGTGAAAGGGATTCTTTAATGAAATGTGAGTGAGCCAATGATGTCATTTCTTTCTTCAGATGCAAATATATCACAGATTCAAATGGTCAgtgatttagatttttctagGGTTACGGATGAGGGTTAGCTTTTATAAATTTTCTCTTTGTATCATTTTTAACACCCATTGTTCTGTTACTTTTGACACAATCTATGACCAATTTTCACATTCTGAGAGTCTTCTGAGAGTGGATGAAGATCTCCAATATGTTCTCAATAAATACAGGTCTGTGTAACAAAGCAGCATTTTTATGTTTAGTCAGCTAACGTTAGGTTTAGTTCAGtctatatttttttgtcatatgacTGATCCCTTTTTACTTACATACATCACTACATACATAACCTACTCTTGGGTTGATTAACTTTATGATTTAGGATCAAATGTAGCtctaaaacaaaccaatcaaAAAGAGAATTACAATGTCTGTAGCATCAGTTACGTGGCCCACACCACTGTTCAGCCAAGGGAACAAATTCTGCTACAAGTTAagtataaaactgttatttatGACAGCGTAAGTAGTGCTTGGCAATTATGGTCGCAAATAAATATCACAATGAATAATTTACCCTCGATTAGGATTAATAAACTTCTTCATTTGGCTTCCGTGTTACAGACTGGACAGGCTATTGTCTTGTGACTACATATAAGATTagggctgtgcgatatgacCAAAAATTTTAATCTTGATATAGGCCACTATATATCCCAAAAATAGagatcacatatatatatgttgcaTATATTAGCCTTCACCAACAGCGGTACGCTTAGCTTTCCGCCTTCGCGTTTCGCCCAGGCAGCAAAATGTGGTTGTATTTTCAGACTATATAGACCATAGAGTGTAATGCTAAACTATAGATGTTTTTCTAAATATATCGCCATATCGCACAGCCCTATATCGAAATAGTACATAAACACAGAAagtacctaaaaaaaaaaaaacacactacaaacTACACTGCTGTGTTGGCAGTTTAACCATCAGTAAAGATCCAGTTACTCTGTAATTTCAGGTTATGAGTgcctaaacattttttattgtttgtttacttgatTGATTCATTTGTTTTGGCTACTGTTAACCAAATAACCAAACTCTTAACTATGAATGTTAAACACGTTTACCTTCTCAGTGACTTAATGGACAGAAAAGGAGGATAGAAATGTTCATAGACATTTTATTATCAAAAAATACTTCAAATCATACCATTGaacactattatttattatacagagGGTTCAGATCATAAGCATGATTCAGATCACTTATTCGTTCATTAGCTTCAGATACAGCTTAAGACAGTTGCAGTTCCTGGAAGAGGCTTCCACGTTTCGATTCCAGCTGTTTGTTTGATTTGCAGCAGAATGAAACGAACAGTAGTTGAAGGAAAGCAGTACGATCTGTTAAGGGGATTTCTTTACTGGCAGTCCAGCCAAATAAACAAATCCTTCTGGAAACTGAAGGCCGCGGAGTGTGGAGACGGGTCGTGAGTCAGGGCTGAGTCTGTCCACTTGGCCGCAGCGTCCACATTCTTAGATGCAGCTGATTTTTAGagctatggaaaaaaagagtCCCCTCACTTTGCAAGCTCTGCAATTAATGATAGACCAAAGCATTAGTGTTTTCTTTACTCGAATAAACAAggatatctttttttattatttccttgTACATTTCGAAGCAGGGAGTATTATGGTTCTGATTTAGTGTTAAATATGTGACATGGAAAAAACTGATTGAGAGCAAAAGCTagagaaggaagataaaggccCACAGGACTGACTGCATTGGATACCTCTCTGCTCGCTCTTGATGACCGttgtggaaagagagagaggaatgtaGTAAAGCCTTGCTAACGAAGAGTTCTGGGGACCGCGGGATTCACATGGATGATTTGGACTGTGAAAGGACGtgtgagtttgtttgtttagtgtgtgtgctgATTACTCTGTCTGTTAGGAGGAATATAGGTAGAAAAGGAGCATTGTCTTCCACTGCTCTGAAAGTCTTTAATAAAGACATGCTCTGAAAGTCTTAATAAAGATTTTATCCAAAAGTGCATTTGTTGTCCACATGTTTTTGCCATTGTCTGCTATTAACTATGCTGGAGGACAAGTCTtgaaacattgcaacatgaagAAAACTCCCTGTTCCTAAAACTAACCTCATAATCTGTATAAGGATCATATCAGGGTACTGTCAAAAGCTGTAATTACTAAAATGCATCCTAGAATAAAAAACTTTCTATATACAAAGGAA

Function

GO: NA

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90064 lncRNA downstream 29744 25306713 ~ 25306973 (-) True G66774
TU90058 lncRNA downstream 35890 25298873 ~ 25300827 (-) True G66773
TU90063 lncRNA downstream 35890 25300187 ~ 25300827 (-) False G66773
TU90050 lncRNA downstream 98797 25237558 ~ 25237920 (-) True G66765
TU89970 lncRNA downstream 226528 25107574 ~ 25110189 (-) True G66696
TU90091 lncRNA upstream 38338 25415493 ~ 25419609 (-) True G66793
TU90090 lncRNA upstream 43176 25420331 ~ 25454510 (-) True G66792
TU90115 lncRNA upstream 91717 25468872 ~ 25524753 (-) True G66814
TU90084 lncRNA upstream 131747 25508902 ~ 25510381 (-) True G66787
TU90080 lncRNA upstream 137621 25514776 ~ 25547918 (-) True G66784
XM_007229736.3 mRNA downstream 784354 24548268 ~ 24552363 (-) True LOC103033632
XM_007229738.3 mRNA downstream 810606 24518610 ~ 24526111 (-) True apex1
XM_022671557.1 mRNA downstream 840471 24493004 ~ 24496246 (-) True LOC111193006
XM_022671558.1 mRNA downstream 857822 24468271 ~ 24478895 (-) True LOC103035119
XM_022671156.1 mRNA downstream 889239 24444549 ~ 24447478 (-) True LOC107197568
XM_007228553.2 mRNA upstream 98711 25475866 ~ 25497521 (-) True LOC103037725
XM_007228549.3 mRNA upstream 139360 25516515 ~ 25530980 (-) True LOC103036580
XM_007228550.3 mRNA upstream 139360 25516515 ~ 25530161 (-) False LOC103036580
XM_022671574.1 mRNA upstream 868605 26245760 ~ 26250947 (-) True LOC111193008
XM_022671576.1 mRNA upstream 908146 26285301 ~ 26778380 (-) True trhde
TU89906 other downstream 674815 24660024 ~ 24661902 (-) True G66642
TU89874 other downstream 828436 24507834 ~ 24508281 (-) True G66619
TU89155 other downstream 3045035 22290685 ~ 22291682 (-) True G66081
TU88823 other downstream 3651889 21629958 ~ 21684828 (-) True G65803
TU88824 other downstream 3651889 21630121 ~ 21684828 (-) False G65803
TU90658 other upstream 2744107 28121262 ~ 28132779 (-) False LOC103041081
TU90659 other upstream 2744107 28121262 ~ 28132779 (-) True LOC103041081
TU90660 other upstream 2744107 28121262 ~ 28132779 (-) False LOC103041081
TU90661 other upstream 2744107 28121262 ~ 28132779 (-) False LOC103041081
XR_002650206.1 other upstream 4066201 29443356 ~ 29467227 (-) False fuk

Expression Profile