RNA id: XM_007229721.2


Basic Information

Item Value
RNA id XM_007229721.2
length 1042
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103029290
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 6139962 ~ 6144208 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACTCTGGCCACTTTAAATAGCTGCCCAACCCTCTGCTGCACCACGTTCACCACAGAACTTCCAGAATGTCTAGGAACCGAACACAAGCCATGCTCTTCGTGGCGCTGCTGTGCCTGGACCTGCACGCCCGGGTGGGTTCTGCGCCCATCTGTCCTCACGGGCACACCGGCTGCCACATCCTATCTCTAGCTGATCTCTTCGACAGGGTCATCCAGCACTCAGCCAGAATGCACGGGCTCTCCAGCGATCTGCACTCTGAGTTTGAACAGTACTTCCTTCCCAGCAAAAACCACATCAGCAGAGTGTATCGCAAGTGCCACACATCCAACATACTGACTCCTAATGGCAAGGAGAATGCACAGAAACTGGCTcGTGAAGAGTTGACAGAGGTAATCATGAAGCTGCTAATGGCCTGGAGGGACCCCCTGTCCCAACTGCACCAGAGCATGGCCCATCAGCAGGACTTCAACAGCTTCAGCAGCAATAAAGCTCTAGAGATGAGTGACATGGTGCATGAGCTCAGGAAAGGAGTGGAGAAAGTTACAGAAAAGATGCAGCTTCTGGGGATGATCAGTAACTCAGTGAGTGGCCTCTCGTCTCCTGAAGCTCTGCTTCCAGCCTCTGAAAGTGGAGAGGCCTTGAGCGACTATGAGCTGCTCTACTGCTTCCGCCGAGATTCGGACAAAGTCCAGAACTACTTGAAGATCCTTAAATGCAGAATTGTACCCGAGCACGGCTGCTGAGGATCACTTTCCTGCACTGCTGGACTGCACCACATGTGCTCGGTGCACTTCATATATCACGGCGGTTCTTGATCTTCCACCAGTTATGTCTACAGCTGATTCCCAATGAAGGATGAAAAGAaggagcctgttttttttttttttatttggagccACAGCTTGTTTGTCTTTATTAGGATACGGTTAGGCTATAAATTGTTCCGAACATTAAAACAGTTCAtgaaaaaacaaggtaaaatatCAGTTAGAATATCGTTACTAATAGTGGCACATCATCCAAGTTTAATAAATAGCATTG

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05439 PRL; prolactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83988 lncRNA downstream 124259 6014004 ~ 6015703 (-) True G62272
TU83989 lncRNA downstream 124259 6014004 ~ 6015703 (-) False G62272
TU83950 lncRNA downstream 172245 5936670 ~ 5967717 (-) False G62237
TU84032 lncRNA upstream 14049 6158257 ~ 6159938 (-) True G62307
TU84086 lncRNA upstream 191315 6335523 ~ 6335771 (-) True G62354
TU84093 lncRNA upstream 210595 6354803 ~ 6355105 (-) True G62361
TU84096 lncRNA upstream 214453 6358661 ~ 6363880 (-) True G62363
TU84108 lncRNA upstream 229487 6373695 ~ 6374194 (-) True G62375
XM_007229722.3 mRNA downstream 20196 6096340 ~ 6119766 (-) True nuak1
XM_007229728.3 mRNA downstream 413679 5667055 ~ 5726283 (-) False abcc9
XM_007229731.3 mRNA downstream 413680 5664901 ~ 5726282 (-) False abcc9
XM_022671264.1 mRNA downstream 413681 5667055 ~ 5726281 (-) False abcc9
XM_007229726.3 mRNA downstream 413681 5667055 ~ 5726281 (-) False abcc9
XM_022671275.1 mRNA upstream 488802 6633010 ~ 6695389 (-) True pphln1
XM_022671274.1 mRNA upstream 488802 6633010 ~ 6695384 (-) False pphln1
XM_022671273.1 mRNA upstream 488802 6633010 ~ 6695384 (-) False pphln1
XM_022671278.1 mRNA upstream 584541 6728749 ~ 6733125 (-) True LOC111192938
XM_022671168.1 mRNA upstream 590949 6735157 ~ 6736574 (-) True LOC111192905
TU83573 other downstream 1517385 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 1757911 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 1757912 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 2481694 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 2591260 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 230261 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 488802 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 527402 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 577894 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 590955 6735163 ~ 6737948 (-) True G62484

Expression Profile