RNA id: XM_022671263.1


Basic Information

Item Value
RNA id XM_022671263.1
length 5232
RNA type mRNA
GC content 0.50
exon number 40
gene id abcc9
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 5664901 ~ 5726283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTGTATAAAACCGCACACCCCCTGCTGCTGTGGTGTCGGTATAGAGACACGCGGTGTGTGTAAGTCAACACATGGTGGTAGCTAAGACATGCTACACATCTTTATTGTTTAGTATTGATGGCGCTGCTCTTtactcgctgtgtgtgtgtgaggagctcTGCTGTGGCGCCGCCGCCATAACGCGCCTGTGAAATGAAGCAGAAATAAAGAGCAGCATCACTAAGCacagctccctctctctcttcctcacacacacatacacacacacacacgctgtgaCTGAGGAAACGCTCAGTGGAGAGATGAAGAACCGAAGGACACGGGAGGCAGCCTGCATCGTttagACTGCTGTCTCCAAAACACAGGCACCAGGAATGAAAGCGTGGTGATACGGGGCATTTCTTCCAGCTCATTTGGTCCAATAAGGCAGCATGGCCTTGTCATTCTGCGGGAACGATCTCAACAACTCCTACAGTGTGGAAAAGGGAGTCCTGAATAATGGCTGCTTTGTGGATGCGCTCAACCTTGTTCCACATGTCTTTCTACTCTTCATCACCTTCCCTATCCTCTTTATTGGCTGGGGCAGTCAGAGCTCGAAGGTACAGATCCATCACAACACCTGGCTACACTTTCCGGGCCATAATCTTCGCTGGATCCTGACCTTCACATTgctgtttgtgcatgtgtgtgagattGCAGAAGGAATCGTCTCCAACACGtggatgcaatcaaatcattTGCATCTTTTTCTGCCTGCTTTTATGGGCTTCATAGCAGCTACCACATCAGTGGTTTATTACCACAATATTGAAACAGCCAATTTCCCCAAACTGCTTCTGGCACTGTTCATATACTGGGTACTGGCGTTCATCACCAAAATCATTAAGCTGTGGAAGTTTGCAGAAGAAGGTCTTGGTGTGGAACATCTGCGCTTCTGTATCACTGCAGTACTCGTGGTGCTGTATGGGCTGCTTATGGCTGTCGAGGTTAATGTCATCAGAGTCAGGAAGTACGTGTTCTTTGCCAATCCTCAGCGAGTAAAACCCCCAGAGGACCTGCAGGATCTTGGAGTGCGATTCCTCCAGCCTTTTGTTAACCTCCTCTCTAAGGCTACGTATTGGTGGATGAACCCACTTATTATTGGAGCTCATAAGAGACCCATTGAACTGAAAAAGATTGGAAAACTGCCCATTGCCATGAGggctctaactaactacctgcgGCTCAAAGATGCCTATGAAGAGCAGAGGCAGAACACAGAGGACCTGGACAAAGCACCGTCCATTTGGAGGTCTATGTACCGAGCCTTTGGTCGCCCCATCCTCCTCAGCAGCACTTTTCGCTACATGGCTGACCTACTGGGCTTTGCAGGTCCACTCTGTATCTCTGGAATCGTAGAACACATGGACAACAAGACAGAGGTTGTCACAATGAAAAAGACAGAGGATCTTCCGTTTGGGGTGTACTTCATGTCCTCCACACAGCTGCTGCAGAACACGTACGTCCTGGCTGTGCTACTCTTCCTCGCTCTGATACTCCAGCGCACCTTCCTGCAGGCATCTTACTATGTCACCATAGAAACTGGCATTAACCTACGAGGAGCGCTTCTGGCAATGATTTACAATAAGATTTTGCGCCTGTCCACTTCCAACATGTCCATGGGAGAAATGACTTTGGGCCAGATCAACAATCTGGTTGCCATCGAGACCAACCAGTTGATGTGGTTCCTTTTCCTGTGCCCGAACTTGTGGGCAATGCCTGTGCAGATCATAATGGGTGTGATCCTGCTGTATTATTTGTTGGGGTTCAGTGCACTGATAGGTGCGTTAGTCATCGTGCTGTTGGCCCCTATTCAGTACCTCATCGCCACCAAACTGGCCGACACACAGAAAAGCTCGTTGGACTACTCAACAGACCGTCTGAAAAAGACCACAGAAATCCTGAAAGGCATAAAGCTGTTGAAGCTCTATGCATGGGAGAATATATTTTGTGACAGTGTGCTGGAAACCAGAAGCAAAGAGCTAACCTGTCTCAGGACCTTTGCCTTCTACACCTCCATGTCCATATTTATGAATGCTGCCATCCCCATTGCGGCTGTGTTAGCGACGTTTGTTACGCATGCATACATTAGTCAGTCCAGACTGAGCCCAGCTGAGGCATTTGCCTCTTTGGCACTCTTCCACATCCTAGTGACACCGCTCTtcctgctgtccactgtggtcAGATTTGCGGTCAAAGCTTTGATCAGTGTCCAAAAGCTTGGCGAGTTCCTGCAGAGCGAAGAGATTGGCGATGACAGCTGGAGAAATGGAGATATGCCTGTGTCTCTAGAGTCCTGCAAGAAACACCCAGGGGCTAGAAATAGGAAGCAGCCACTGCGCTATCAGATGGACAACTACGAGCAGCCCCTGCGCAGGCAGCTGCGCCCCACTGAGACCGAGGATGTAGCCGTCAAGGTAAACAATGGCTACTTTACATGGGGAAGCAACTTGTCAACATTGTCAGACATCAACATCCGTATCCCCACAGGTCAGCTAACCATGATCGTGGGCCAGGTGGGTTGTGGGAAGTCCTCACTGTTGTTAGCCATGCTGGGAGAGATGCAGACCCTCAGTGGAAAAGTCTACTGGAGCAATAAGAACAGGTACTCCGTGGCCTATGCAGCTCAGAAGTCATGGCTGCTGAATGCTACAGTAGAGGACAACATCACATTTGGAAGTCCTTTCAGCAAGCAGAGATACAAGGCTGTAATTGACGCTTGCTCTCTGCAGCCAGATATCGACCTTCTTCCTTTTGGAGACCAGACTGAAATTGGAGAAAGGGGAATAAATCTTAGCGGAGGCCAGAGACAGAGGATCTGTGTGGCCAGAGCTCTATACCAGAACACCAACATTGTTTTCCTGGATGACCCATTTTCTGCTCTGGACATCCATTTAAGTGACCACCTGATGCAAGAAGGCATTCTGAAGTTCCTGCAGGATGATAAACGAACCGTGGTCCTGGTCACCCACAAACTGCAGTACCTTATTCATGCTGACTGGATCATAGCCATGAAGGACGGCTCTGTGTTGAGAGAGGGAACGTTGAAGGACATTCAGACTCATGATGTGGAGTTGTATGAACACTGGAAGACTCTGATGAACAGACAAGATCAGGAGCTAGAAAAGGACACAGAGATTGAGAGCCAGACCACGTTGGAGAGGAAGACTCTGAGAAGAGCATTCTACTCCAGAGAAGCCAAGAACCAAAtagatgatgaagatgaggaggaagaagaggaggaggacgaaGATGATAACATGTCTACCACCACCAGCCGCCGCTCAAAGATCCCGTGGAGAGTGTGCTGGCGTTACTTGTCCTCTGGTGGCTTTTTCTTGGTCTTCTTACTGGTCACCTCAAAGCTGGCCAAGCACTCCGTCATGGTGGCCATTGACTACTGGCTAGCAGACTGGACCTCCTCAGCTTCAAATGACCCCATCAGTTCGTTCATCTCGGACGCTACTGCCACTAACGACACAACTCGGGCAGCTCAGAACGCAGAGGACCAGTCCTACTTGTTGGTGTTTATTATCCTCTGTGGAGCTGGAATAGTCCTGTGTCTCATCACTTCTTTGACTGTAGAGTTTCTGGGGCTTTCTGCTGCCACTAATTTGCACCATAACTTGCTCAACAAGATCATCCATGCTCCTCTTAGATTTTTTGACGTCACTCCACTTGGCCAAATCCTCAACCGTTTTTCTGCCGACACCAACATTATCGATCAGCACATTCCTCCAACACTGGAATCTCTCACGCGCTCcactctcctctgtctctcggCCATTGGCATCATTGCTTTTGTTACACCAGTCTTTCTTATTGCGCTGTTCCCCCTTGCAGTGGCCTTCTATTTTATCCAGAAGTATTTCCGGGTCGCATCCAAAGATCTGCAAGACCTGGATGACTCCACTCAGCTCCCTTTGCTCTGCCACTTTTCAGAAACTGCAGAAGGACTTACTACAATTAGAGCTTTTAGACATGAGGCTCGCTTTAAGCAGAGAATGCTGGAGCTGACCGACACCAACAACACAGcgtacctctttctctctgctgccAACCGGTGGCTGGAGGTCAGAACAGATTACTTAGGTGCTGTGATTGTACTCACGGCTGCTGTGGCTGCCATCTGGATGCCTTTCTCTAGACTCCAGTCTGGTCTGGTTGGGCTGGGTCTAACATACGCCCTCACTGTGACAAACTATCTAAACTGGGTGGTGAGGAACCTGGCAGATTTGGAGGTTCAGATGGCTGCAGTTAAGAAGGTCAACAGCTTCCTGAGCACAGAGTCAGAGAACTATGAGGGTTCTATAGACGTGTCCCAGGTTCCAGAGGACTGGCCCCAGCACGGTGAGATTAAGATCCAGGATCTATGTGTGAGATACGACCCAATGCTGAAACCTGTTCTGAAACACGTTAATGCCTTCATCAACCCTGGACAGAAGgtggGCATATGCGGTAGAACAGGCAGTGGAAAGTCCTCGCTGTCTCTGGCCTTCTTCAACATGGTGGATGTGTTTGAAGGAAAAATCATAATAGACGGCATTGATATTTGCAAACTGCCCCTGCAGACTCTGAGATCCCGCCTGTCCATCATTCTTCAGGATCCAGTCCTGTTCAGTGGCTCCATCCGATTTAACCTCGACCCAGAGCGCACCTGCACAGATGACAGGCTATGGGAGGCTCTCGAAATCGCCCAGCTGAAGAATATGGTGAAAGCTCTCCCAGGAGGGCTGGATGCTGTAATAACAGAGGGAGGGGAGAACTTCAGCGTGGGTCAGCGTCAGCTCTTCTGCCTTGCCCGAGCCTTTGTCCGCAAGAGCAGCATCCTCATCATGGATGAAGCCACAGCCTCCATTGACATGGCCACGGAGAACATTTTACAGAAGGTAGTGATGACAGCGTTTGCTGACCGCACTGTCGTTACCATCGCACATCTGGTCGCCTCCATCCTGGAGGCGGAGCAGGTGCTGGTGTTTTCCTCTGGGATTCTGGTCGAGTGCGACAGCGCTGCTAACCTGTTAGCGCAGGAGGACAGCCTCTTCAGCATTCTCGTGCGCACGCACAAGTAGCCTCACCCGCAGAACCACCTGGGCATCCTGCACCGAGTACATACTATCCTGACGGCCGACCTTGTGATTGTGATGAAGAGAGGGAACATCCTTGAGTACGGTAAACCAGAGACGCTGAT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0008281 sulfonylurea receptor activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83808 lncRNA downstream 136859 5528696 ~ 5530196 (-) True G62150
TU83804 lncRNA downstream 140195 5525793 ~ 5526860 (-) True G62147
TU83780 lncRNA downstream 214798 5445563 ~ 5452257 (-) True G62127
TU83775 lncRNA downstream 216778 5443582 ~ 5450277 (-) True G62125
TU83770 lncRNA downstream 234667 5432090 ~ 5432388 (-) True G62121
TU83915 lncRNA upstream 4749 5731028 ~ 5732187 (-) True G62210
TU83922 lncRNA upstream 33184 5759463 ~ 5761833 (-) True G62217
TU83948 lncRNA upstream 202213 5928492 ~ 5967717 (-) True G62237
TU83950 lncRNA upstream 210391 5936670 ~ 5967717 (-) False G62237
TU83949 lncRNA upstream 220655 5946934 ~ 5967717 (-) False G62237
XM_007229732.3 mRNA downstream 3774 5658448 ~ 5663281 (-) True kcnj8
XM_022671261.1 mRNA downstream 14032 5644509 ~ 5653023 (-) True cmas
XM_022671259.1 mRNA downstream 172404 5456709 ~ 5494651 (-) True LOC103037729
XM_022671260.1 mRNA downstream 172410 5456709 ~ 5494645 (-) False LOC103037729
XM_007252710.3 mRNA downstream 330656 5314557 ~ 5336399 (-) True LOC103042505
XM_007229722.3 mRNA upstream 370061 6096340 ~ 6119766 (-) True nuak1
XM_007229721.2 mRNA upstream 413683 6139962 ~ 6144208 (-) True LOC103029290
XM_022671275.1 mRNA upstream 906731 6633010 ~ 6695389 (-) True pphln1
XM_022671274.1 mRNA upstream 906731 6633010 ~ 6695384 (-) False pphln1
XM_022671273.1 mRNA upstream 906731 6633010 ~ 6695384 (-) False pphln1
TU83573 other downstream 1044478 4622213 ~ 4622577 (-) True G61942
XR_002650185.1 other downstream 1285004 4342917 ~ 4382051 (-) False LOC103039416
XR_455047.3 other downstream 1285005 4335118 ~ 4382050 (-) True LOC103039416
TU83243 other downstream 2008787 3651966 ~ 3658268 (-) False G61676
TU83189 other downstream 2118353 3544185 ~ 3548702 (-) False mdm1
TU84110 other upstream 648190 6374469 ~ 6374980 (-) True G62377
XR_002650186.1 other upstream 906731 6633010 ~ 6695384 (-) False pphln1
TU84255 other upstream 945331 6671610 ~ 6737948 (-) False G62484
XR_002650150.1 other upstream 995823 6722102 ~ 6723530 (-) True LOC111192868
TU84254 other upstream 1008884 6735163 ~ 6737948 (-) True G62484

Expression Profile