RNA id: XM_007229739.3


Basic Information

Item Value
RNA id XM_007229739.3
length 3621
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC103034593
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 24510489 ~ 24517356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGTCAGAGCGGAACTGAGCACTAGGGCCGTTTTCCTCTCGGGCGGGTGATGGTTGTTTGGTCCAGCTTcactataaacactcagcaCAGCGTTTCCCCCTGATGAGGGCGATGCGGAATCGCCGGTAGACTGAACCCGTCcggtctgtgtgtttacagcgGCGTCATGGAGGCGGGCTCGGTGGGCTCGGTGGAAGGGCGGCAGACAGCACTCCCTCTTTCTGCTCTGCGCCTTGTGGTGCCACCACTGCGACTAATGTCTGCGTTTTTGTGGCAAGTGGTTCAACGGTGCAATGTAACACAATATGGAAAGTTTGAGCAGTTTGTTATGATGGTGTCAGAAACGGTTCCAGACATCATGAGTCAGAACCTGGTTAATAAACTGATCTTCCACCTACGAAAAAAGGTGATTATAGAGCTTTGTCTTAAGGATGAAACACCTGATGTCTGGATAATTCAAGCACATTTGGACACACTTCGCAATCTTACTCTTAATTGCAGAGATGTGGAAAGTGAAATCATGAATACTAAATTCATTAAGATGATTCATAACATTTTGGAGGACACAGTCAAAAGAGAGACCTTTATTCAGAATGTGTTTCCTGCTGAATATGGTGCTGGATTTGATGCAGTGTTGCAGAGCTTAGCATGGGAGTTCCTGAGAAGAGTAGATGAACTACTACCAGTACCAAACCTTAAAGAGACGGCCACGTGGTTATGTGGTGGCCTGGCTGCAATGGAGGATATTGTGCAGCCGCTCTCTGACCCAGCAGAACTAAGGGATGTGCTACAGCACTTTACAACCAAGAGACAAAGCAACGTGAATGCATCCACCTATTCAACAAAGGATGTTGTTTGCTTTCCCCACTTGACTGGTGATGGGTCAATCTTGGCTTCTGCCTCCATTAAACAGGAGCCCGTCTTTGAAGAGGAAGTCTCCCATTCTTCATCTGTTGCACAAGAGTCAATCATCATTGCACAAGCAATGTCTGAAAACCAGTCAGAGTCTGACCGTGCTGCCGCCACTATAATGAGCCCCGAACCCAGCGACACAGAGGAAGTGGAACCTTTGGTGGACAACATCGCAGTAGCCACTACTGTTGGGGATGAGGATGAATTACAAGAGGAAACAGTTTACCAAGAAAACAATGCAGAGGTTTGTGAAGTCCAGCAAATTTACCTCACAGCAGATGGCTCCACTGTAATAGTTTCAGAACTTGACAACGGGGGAGATGAGaccacacagctgcagtttctTGAACAGTCAGAAGCAGAGCAGAGTCCTGAAATAAGGGAAATTAGTGTTGAGGAGTGGATCTCAGAAATGGCAGGAAGGGTGATTTCACTTCCATCTGTGTCCCCGTCAACTCCTGTGGAGGTGGTTGAAGAGGAGACAACATATGTCCCCATCATTGAAAGACCGCCGTCTATAAAGACAATCATTAATAGGAAAAGCGTACCCATTCAGACAACTCCAGGTAGAAAGGTGTTGGCAGTGCCCTATCAGGTGAAACAAGACGAAGCGAAAAGGAACcatgtgtgtgtcgtgtgtaaGAAGGAGTTCCGTTACGATTGCCAGCTGAAGAACCACATGCGAACACACACAGGTGAAAAGCTGTTTCAGTGTTCggaatgtggcaaaagtttccGGTGTCTAAGTTTCTTATCCAGTCACATTAAAACGCACTCACTCACCAGACCCTTCAAATGCATGCTATGCTCCAAAACCTTCCGCAAGAAAGCAGACCTCATCAAGCACACTCGTGTTCATACGGGTGAGAAACCATACAAGTGCAACATTTGCGGGAAGAGCTTTTCACAAGGCTCGTACCTGAAGATCCATCAGGAGTGCCATACTTCTGAAAGCCTCCACCAGTGCCCACACTGCGACAAATGCTTCCCCACCGCTTTCAAGCTCTCTGTCCATATTCGCTACCACTCCATGGCACGCTCTTACCAGTGCAACGTGTGCGGCAAGAGCTTCATCTACGCCAGCCTTCTGAAGAGGCACAAAGGGTATCACGTTGGGGATCGCAAGTACCTGTGCTCTGTGTGTGGCAAATCCTTTGTGTACATGTTTGATTTGAAGAAACACCTGCGTAACCATCAGAGACCCCGCATGCAGATCCCATGCACCCTCTGTAACAAGACATTCGCCGGACCCGAAATGTTACGGTGCCACATGCGCATTCACACGGGTGAGCGTCCCTTTAGCTGCAAGGTGTGCGGCAAAGCATTCTCCCAGATCGGCAACATGAAGAGGCACGAACGTGTGCACACAGGTGAGCGGCCTTTCACCTGCAAGGAGTGCGGTAAAACCTACAAGCACTCCTCTCACCTGAAGACACACATGCTTAATCACACAGGCGAGCGACCGTGGCAGTGCTCCCAGTGCGGCAAGAGCTTCAAGTTCGCTGCGCCACTCAGGAAACATGAGCAGACTCACCTGGCTGAGCAAGGGGAGCGCAGGGGCTATGACCACATGCGCAAAAGAAGCGAAACCAAAACCACATCATGATCAATGAGAATGAGCACTTTATTTTTTCAACCTCTCTGATTGAGCTGGAACTTCTGTTTTAGGCTCAGTATTTTGTTTTGAAACCTGGATAAACCTGAAACCAATCTAATATGAGCAGTTGATATAGGTCACAAAGAGGAGaaagagtttaaaaagaggtaGAGCAGATATTGGAAGAGAAAATGCAAATGTGTAGCAGTGCGTACACAGCAGAATTCTCTGACTTTGTAATCTCATGTCCTAAAAAATCTACTCTGTGAAGTAGTAAACAGATCTTCAAGCAAATCAAGTCTGACCAGTACATCTATATACTTTATTTGAGTCTCAAATAACTCCCATCTAACTATGTAGTGCACCATGTAAGTCAGGAAAACACTCAGACTTCTACACTCAGACAGGGTTCTGTATGTCTTATAGAAAACCATGAATACTGAGCCTGAGATATCATGACTCTAGTTAACATTTTGTTAGATTGTAGATTCTGCAGTTTCTGGAATCAGGCAGTGGAATCAGGCAGTGCACTATATACAGATagatatagagtatatagagtCAGGTGGGGTTTGCATTTGTACATGCATGGAATTTATACAGTCAGAGATAGTGGTGTGAGCCAGGTACTTAGCAAGTAAATGCATACGTGGTTCACGTACAACAGaaatagtattttattaaagaatTCTGCAGAGATTCTTTGTAAGAGAGTGCTATTGTACATATCTGTATTTTcatactttcctatttttgacATTCTGACCTGGGAGCACATGCAACAGTTCTGTTAAAGTTAAGTTCTGTTATGGTTAAAGAGGAACTTTTGCCACTATCAACATTACTAAAAGCAGTGATTAGGATCGCAATACTAGACATTCACATTATGCTTAATAATGGCTCAATTGCTGGTAAATAGgagtaaacatttatttacacgTTATGTCTGGAATTCTGAACCCTTTTGGAAACTCGTTTTTTTGAGTtgttaattttacattataaattgaAATACCAAATCCCAGGGTATCTAATTTGTTAATAAGAAGTAAATATGGTTATATTTGATTTATGGttacaatatgttttattcaataaataatTGCATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89786 lncRNA upstream 4949 24505341 ~ 24505541 (+) True G66556
TU89752 lncRNA upstream 96212 24408520 ~ 24414278 (+) True G66524
TU89753 lncRNA upstream 98373 24408520 ~ 24412117 (+) False G66524
TU89739 lncRNA upstream 120716 24384919 ~ 24389774 (+) True G66514
TU89699 lncRNA upstream 186458 24323810 ~ 24324032 (+) True G66488
TU89790 lncRNA downstream 30861 24548217 ~ 24552340 (+) False osgep
TU89796 lncRNA downstream 32505 24549861 ~ 24552340 (+) False osgep
TU89814 lncRNA downstream 61797 24579153 ~ 24579353 (+) True G66577
TU89911 lncRNA downstream 201241 24718597 ~ 24718895 (+) True G66643
TU89924 lncRNA downstream 294059 24811415 ~ 24816069 (+) True G66656
XM_022671187.1 mRNA upstream 49489 24459403 ~ 24461001 (+) True LOC111192915
XM_022671556.1 mRNA upstream 127468 24368373 ~ 24383022 (+) False rpap3
XM_007229748.3 mRNA upstream 190424 24296917 ~ 24320066 (+) True lrig3
XM_015602945.2 mRNA upstream 392777 24026461 ~ 24117713 (+) True LOC103023565
XM_015605311.2 mRNA downstream 8011 24525367 ~ 24545081 (+) False osgep
XM_007229737.3 mRNA downstream 38245 24555601 ~ 24559622 (+) True LOC103033942
XM_007228543.3 mRNA downstream 81810 24599166 ~ 24647676 (+) True lingo1
XM_007228544.3 mRNA downstream 82319 24599675 ~ 24647676 (+) False lingo1
XM_022671560.1 mRNA downstream 671829 25189185 ~ 25300875 (+) True cspg4
XR_002650203.1 other upstream 127468 24367492 ~ 24383022 (+) False rpap3
XR_002650202.1 other upstream 127468 24368373 ~ 24383022 (+) True rpap3
XR_002650204.1 other upstream 127468 24368373 ~ 24383022 (+) False rpap3
TU89518 other upstream 800414 23698152 ~ 23710076 (+) False LOC103027234
TU89474 other upstream 1026557 23483333 ~ 23483933 (+) True G66303
TU89793 other downstream 1266 24518622 ~ 24526052 (+) True osgep
TU89825 other downstream 128370 24645726 ~ 24684580 (+) False lingo1
TU90292 other downstream 1572476 26089832 ~ 26092089 (+) False LOC111192916
XR_002650161.1 other downstream 2979439 27496795 ~ 27497727 (+) True LOC111192885
TU90964 other downstream 5039780 29557136 ~ 29558666 (+) True G67459

Expression Profile