RNA id: XM_022671245.1


Basic Information

Item Value
RNA id XM_022671245.1
length 2078
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC103027723
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 4048242 ~ 4074563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTGTTGAATGGCCGCAGGGGGCATGGCTACCCTGTTCTTGGCAGCAGTGCTGTGTCATGAGGCTGGAGTCACGCTCTGATGTGtgattcagtgattgccgtggtcCGGCGCCATGGTAGACGTACCCAGTCTGTTCAGTCCCTTGTCTCCAGTGGGGGAGTCAGTGTTGGACAGCCCGCTGTGTGGGGAGCTGATCATGAACATGGAGGAGCTCGAGGACATCACCTGCTCCCTCAGCGAGGACCCGTTCAATCTGCTCTACATGCCTGACTGGCAgagctccagcaccagctctgaaagctctactGTTCAAGaagTCCCGAGTCCAGCCTCTAGCCCTTCCTCTACAGTGTACGGAGTGGTCACAGGCGCGGATGAAGTCATCTCCAGCCCGCTGAATCTTGAGTGTCGCGTGTGTGCCGATCGTGCCTCTGGCTTTCACTATGGAGTGCATGCCTGTGAGGGATGCAAGGGTTTCTTCAGGAGAACCATACGCCTCAAGCTGGAGTATGACAAGTGTGAGCGCAACtgtaaaatacagaagaaaaaccGGAACAAGTGTCAGTACTGCCGCTTCCACAAGTGCCTTGCTGTGGGCATGTCCCATAATGctATCCGTTTCGGTCGGATGCCCCGCTCAGAGAAGATGAAGCTGAGAGCGAAGCTGCAGACCGGAGAGATAGAGGATGGAGAGACGCAGTTGGCTGATCTGAAGAGTCTGGCCAGGCAGATCCACGAAGCCTACCTCAAAAACTTCCAAATGAGCAAGGCCAAAGCACGAGTCTTCCTCGCTGGGAAGACCAGCACATCACCTTTTGTCATCCATGACCTGGAAACCCTGCAGCAGGCGCAGTCCATCCTAGCTGCCCAGATGCTGGTTGATGAGAAGGAAGAGTTGGTGAGTGGTGTGCAGGAACGAGAGACAGAGTCCCACCTCTTTCGCTGCTGCCAGTACACCTCAGTGGAAACGGTCACCCAGCTGACTGAATTCGCCAAAGCTGTGCCGGGCTTCGCGAGTCTGGACATAAACGACCAGGTGACTCTGCTAAAGTATGGTGTGCATGAGGCCTTTTTCACGCTGCTGTCCTCCTACATGAACAAGGATGGGCTGCTGGTGGCCAGCGGTGGCGGCTTCATCACCCGCGAATTCTTAAAGAGCCTCCGACGACCCTTCAGCGACATGCTGGAGCCCAAGTTCCAGTTCGCCATACGCTTCAACGCTCTGGAGCTGGATGACAGTGATCTGGCGCTATTTGTGGCCACAATCATCTGCTGTGGAGACCGACCAGGACTGGCAAACGTGTCAGACATTGAATGCATTCAAGAAAGTATCGTCAATGCTCTACGACTCCATCTGCAGGCCAACCACCCTGACAACACCATGCTCTTCCCCAAACTCCTGCAGAAACTGGCTGACCTTCGGGAGCTGGTAACAGAGCACGCTCAGCTGGTGGAGGACATTAAGAACACACAGGACAGTTTTCTCCACCCACTACTGCAGGAAATCTACAAGGATATGTACTGAGGACTGAACCTTTGGGTGGTAAGACTGGATTTCAGGCTGCCTTTGATAAACTCTGGTGGTCTGGTGGAAGTTGGATTCGCGCTGATCACAGTTCCGAAACAGTAAACTATCATGGATTTTGCAAGAGTTTAAGATTTTAATGGCTGTCCATTAATCCGCCTAACCTATAGACTGCAGTACAAGCCTTCATTCAGAGATGTACAACACACACGAAAACACTGCTGCAAGCAGGTCCTTCAATCAACAGTTTCTCTGACATCACTGCCAATCAAACTTCTTGCCATGAATTTTTGAAGTGAAGTTGTTTTATACCTTctgaaagcagtgtgtaagctATTTTCAAAACGCATCTGTAGTAATAATGTGAATAGAATAAATGCTGGATTAACATGTATAGTAGTTTTAGTTGTAAGAATGTGAATATAAACAGTTTATGCACTCCACCTTTATTAATCAAaagatgttatttatttttgaaaatatgaaACCAGTGCCATTAGAAGAAGCTAATTAATATATGACTgaatgttaatgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_452999.3 lncRNA upstream 9743 4011384 ~ 4044308 (+) True LOC103028258
XR_002650148.1 lncRNA upstream 339803 3713557 ~ 3714248 (+) True LOC111192865
XR_002650147.1 lncRNA upstream 340628 3712242 ~ 3713423 (+) True LOC111192864
TU83212 lncRNA upstream 356270 3695234 ~ 3697781 (+) True G61657
TU83118 lncRNA upstream 656279 3397028 ~ 3397772 (+) False G61607
TU83415 lncRNA downstream 48119 4122682 ~ 4122963 (+) True G61815
TU83385 lncRNA downstream 55754 4130317 ~ 4131090 (+) True G61790
TU83380 lncRNA downstream 57200 4131763 ~ 4136771 (+) True G61786
TU83463 lncRNA downstream 68498 4143061 ~ 4143691 (+) True G61852
TU83484 lncRNA downstream 245289 4319852 ~ 4325034 (+) True LOC111192934
XM_007232269.3 mRNA upstream 85095 3956662 ~ 3968956 (+) True atxn10
XM_022671244.1 mRNA upstream 104317 3937491 ~ 3949734 (+) True LOC103029111
XM_022671242.1 mRNA upstream 200324 3847043 ~ 3853727 (+) True LOC103031106
XM_015601030.2 mRNA upstream 200324 3847052 ~ 3853727 (+) False LOC103031106
XM_007232278.3 mRNA upstream 359127 3656162 ~ 3694924 (+) True cfap54
XM_022671246.1 mRNA downstream 9120 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA downstream 9120 4083683 ~ 4099389 (+) False mcm10
XM_007252707.3 mRNA downstream 600796 4675359 ~ 4701435 (+) True LOC103041372
XM_022671258.1 mRNA downstream 1176570 5251133 ~ 5261551 (+) True ifrd1
XM_022671166.1 mRNA downstream 1347205 5421768 ~ 5423304 (+) True LOC107197570
TU83070 other upstream 750053 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 750053 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 2118552 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2232275 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2232716 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 1671641 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 1907810 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2776667 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 4458196 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 4458785 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile