RNA id: XM_007232269.3


Basic Information

Item Value
RNA id XM_007232269.3
length 2106
RNA type mRNA
GC content 0.49
exon number 11
gene id atxn10
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3956662 ~ 3968956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGGGTTGTTGTAGCGGCTCGCAGTCCCTGTGGCTGTGTGACAGAAAGCATGTGGAGCCTGAAGTCTGTGAACCTGGAGGATTTACTTGCAGACAGGTTAAATCTGCAGCTCCTCGCTGTCCTGCAGGCCGCGACCAACAATTTCCGAGATGAAGAGCTCAGATTCAATGTCGAGGTGGATGTCCTTGAGAGACTGTCTGCAGTGCTGTCCAGGCTCTCAGAGGAGATTCAGGTTTTAAGTGACGTGAATGATGAACAGCAGTCCGCTTTGCTGTGTCTTCAGCTTACGGCCGAATGTTTCAGAGCTCAACGAAATGCCTGTGTGCAGTGTTCCCGCAACCAGTGTTTTTTAAGaGATCAAGGCTGTATCCAGGTATCATTAGAGATTTTGAGAAAGCTCCTCAAGCTTGCTTCTGGAGTCTCAGATTACCTTTTTGATGCACTTCGATGTGGGATTCAATTTCTCGGTAACATTGCAGTTGGGAACCCTCTCTGCAAAACTGACATTTGGGACCATGGTTTTCCACACATATTTTCGGATCTGCTGGAGCTTCCTGATGAGAAGACTATAGCGTATACGTGCATGGTGCTTCACACCTGTCTGGATGAGGACAAAATAGAGCAGCTGGGGACAGAACCGGAGCAGCTGAAGGTGGCGCTGAAGGTCACTGAGTTGTGCCGGACTCTGCCAGAAGTAGACTGGACGGTGCTGATTGTCACCCAACATTTCTTCAGATCATCTAAACTCATTGAAAGGATGTATACAGAGATGACTGATCAAGAAAGgcttaCTTTACTGGATCTGATCTCAGCCCAACTTGGGGAAGGTAAAGAGGACTGTCTGATTCCTCTGAAAACAGCCCAGTTTCTAGCCACCTGCTTCCAGCACAGCTGCAGAGATGTTCTTTCTCTTAGCTCTGTCTCATCAGCAGATGATCAGAAAGCCTTGGCAGTGATCACACTTCTGGATATTCTCTGTGAGATGACCTCTGACCAGAAAACATTTATGGCGCTGCAGGATCACCCAGACCTTCTCCAAACAGCCATTGATCTCCTGAAGGAAGTCAACTTGCTGGGGAAAACCAGTAGGAACGTCTTCAGTGCGGCTCAGGAGTTCAACTTTACAAAGTCAGGGGGTACTGGTGCCCATCCTGCGCTCAGCTTCAAAGCCCACCTGATCCGACTGATTGGAAACCTATGCCACAGCCACACAATCAACCAGGATCAGGTCAGAGAACTGGACGGTTTAGCCCTTATCCTGGACAACTGCAGCATTGACAGCAACAATCCATTCATAAGCCAATGGGCAGTCTTTGCCATCCGCAACATTCTTGAACATAACCTGGAGAACCAGAAGCTGGTGCAGGGCCTGAGGAGGCAGGGGGTGGCTGACGACACGGTGCTGAGGGAAATGGGCTTCCGTGTGGAGGAGAGGGATGGCAGCTTGCTCCTCAGACCCctgaagaaggaggaggaggagctgggaGAGCGCTAAACCAAGAGCACCAGAGTTCTTCCCACCCCATCCCATTCCCCTACGCTCTAAATTACACTCTGGAGACAGCTTAAGACACCCACTGAGTCCGTTGTGCACACAAAAAACGCAGAGGGCATTTTAATATCCAATCAGTATTGTGAACACAAGGAGAAAAAGGTTGGGGGGGCTGTGCTTTGTGCCATCAACAGAAGAGGAGCGCTGAGGGCTTTTCTCCCGGGACTCATGCTGATGTCTGTGATGCATTTAGTGGTCTTTGATTCCAGCTCCCCCTGAATAGGATTCAAATCCTCTGAAACAAGGAGACCCATGTCTTCCTGGCTTTTCAGCTACCAAATAGATTCTGGTGACCAGTGGGGAATAGGGGTTAATCCCTAATCCAGTGAGTTTTATGGAGAGACCTGGGGCCTCCTGATCCGTTCACACAAGAGTTGACTCAATAGCCGTGGGACTTGGTTCCACTTGTTGGGTTtgttttgtgggttttttttttcttttcttttttttggctctGTTTTGTGCTTCTGAATATCACAGGTTTATCTGCAGCCCTACAAAATTCTTGTGCTGCTTTTTTCTATTACAGATAAATTAACAAGTAGCAAACTTA

Function

GO: NA

KEGG:

id description
K19323 ATXN10; ataxin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650148.1 lncRNA upstream 242414 3713557 ~ 3714248 (+) True LOC111192865
XR_002650147.1 lncRNA upstream 243239 3712242 ~ 3713423 (+) True LOC111192864
TU83212 lncRNA upstream 258881 3695234 ~ 3697781 (+) True G61657
TU83115 lncRNA upstream 558890 3397028 ~ 3397772 (+) False G61607
XR_452999.3 lncRNA downstream 42428 4011384 ~ 4044308 (+) True LOC103028258
TU83399 lncRNA downstream 87483 4056439 ~ 4056959 (+) True G61804
TU83415 lncRNA downstream 153726 4122682 ~ 4122963 (+) True G61815
TU83385 lncRNA downstream 161361 4130317 ~ 4131090 (+) True G61790
TU83380 lncRNA downstream 162807 4131763 ~ 4136771 (+) True G61786
XM_022671244.1 mRNA upstream 6928 3937491 ~ 3949734 (+) True LOC103029111
XM_022671242.1 mRNA upstream 102935 3847043 ~ 3853727 (+) True LOC103031106
XM_015601030.2 mRNA upstream 102935 3847052 ~ 3853727 (+) False LOC103031106
XM_007232278.3 mRNA upstream 261738 3656162 ~ 3694924 (+) True cfap54
XM_022671240.1 mRNA upstream 305011 3645317 ~ 3651651 (+) True mcat
XM_007232266.3 mRNA downstream 79286 4048242 ~ 4074563 (+) True LOC103027723
XM_007232267.3 mRNA downstream 83386 4052342 ~ 4074563 (+) False LOC103027723
XM_022671245.1 mRNA downstream 85095 4054051 ~ 4074563 (+) False LOC103027723
XM_022671246.1 mRNA downstream 114727 4083683 ~ 4099389 (+) True mcm10
XM_022671247.1 mRNA downstream 114727 4083683 ~ 4099389 (+) False mcm10
TU83070 other upstream 652664 3296546 ~ 3303998 (+) True G61575
TU83069 other upstream 652664 3299089 ~ 3303998 (+) False G61575
TU82609 other upstream 2021163 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 2134886 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 2135327 1821248 ~ 1821335 (+) True trnay-gua_7
TU83815 other downstream 1777248 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 2013417 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 2882274 6851230 ~ 6855762 (+) True G62455
TU84764 other downstream 4563803 8532759 ~ 8533232 (+) False LOC103041471
TU84760 other downstream 4564392 8533348 ~ 8540123 (+) True LOC103041471

Expression Profile