RNA id: XM_007232390.3


Basic Information

Item Value
RNA id XM_007232390.3
length 2321
RNA type mRNA
GC content 0.55
exon number 10
gene id LOC103042295
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9986304 ~ 10032671 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCTCGCGAGAGTGCTGCAGGTTCTCGGTGGTGGAGGGAATGCAGCTTTAGAGTGGAGACGGGCAGAGAGTGTTTGTGCAGGtctgagtgaatgagagagtgagagtgagaggtagaagtgtgtaagagtgaaaggcagagagtgagagagtgtgtgaatgtgttgaaTGCAGTCTGCGGTTGCCCCTGCTTCCTCCGCGGCTCTGTGACTGTTCCACGCCGGCGCGCTGGGGGGGAGCTCGGGCAAAGGGAGCCGCGCAGTTCACCGCTCGGACCCGCGGCGCAGCGCCGGCAGAAGCAGCACCGGCAccgtcagcagcagcagcagcatgctcACCCGGGTCAAGTCCGCCGTGGCCAGCTTCGTGGGCGGCATCATGGCCGGCTCCTCGGACGGAGAGCAGCCGAGCGGCGCCGAGCTGCCCCACAAATTCCCCTACATGAGGCCGGCCTTCCTCGGACTGTCGCCGGACGAGATCGAGTGCTCGGCGGATCACATCGCGCGGCCCATCCTCATCCTCAAAGAGACGAAGAGATTACCGTGGGCTACCGGCTACGCAGAGGTGATCAATGCAGGGAAGAGTGCTCTAAATGAGGACCAGGCCTGCTGTGAGGTCATCATGGTGAAGAAGAAGCCCGGAGCACCGTCCACACCCAGCAAAACTCCCACAGCCAAAAGGAGGTCATCACTGCCCAACGGAGAGGGCCTGGGGCTCAGAGAGAGTTCAGAGTCTGATGGGTTACTCATTCATTACTGGGCTCTGTTTGATGGACACGCTGGATCAGGCGCAGCAGTCATGGCCTCCAAACTGCTCCAGCAGCACATCATAGAGCAGCTGCAGGACGTCCTGGACATCCTGCGTAACCTGGGCTCGCTCCCCCCCACCGTACTGGGAGAAGAGCCCAACCACCCGGGAACCCCCGGCACCAATCGCACCCTGACCCGAGCCGCCTCCCTCCGCGGTGCTGCAGGAGCTCCCGGCTCACCCAGCACCCCCCCACCCCGCTTCTTCACTGAGAAGAAGATCCAGCACGAGAGCCTGGTGATCGGAGCTCTGGAGAACGCTTTCAAAGACATGgaTAGTCAGATCGAGAGGGAGAAAGCTGTGTATAATATATCTGGTGGATGCACTGCGCTGGTGGTGGCCTTCATTCTGGGAAAGCTGTACGTGGCCAACGCTGGGGACAGCAGAGCCATCATAATCAGGAATGGGGAGATCATTCCAGTGTCTGCAGAGTTCACCCCTGAATCAGAGCGGCAGAGGCTGCAGTTCCTGGGTTTCATGCAGCCCCATTTATTAGGAGGAGAGTTCACACACCTGGAGTTCCCGAGGAGAGTACAGAGGAAGGAAGTGGGGAAGAAGATGCTGTATCGGGACTTCACCATGACCGGCTGGGCGTACAAAACCATCGAGGATGAAGACCTCAGATTCCCCTTAATATACGGCGAGGGGAAGAAGGCTCGAGTGATGGCCACAATAGGAGTGACCCGTGGTCTAGGAGACCATGACCTCAAAGTCCATGACTCCAACATCTACATTAAACCGTTTCTGTCCTGCTGTCCAGAGGTGAGGGTGTATAACCTGACGCAGTATGAGCACGGAGCTGATGATGTGCTGGTGATGGGCACGGATGGCCTGTGGGACGTCCTCTCTAACGAAGAAGTGTCAGAGTCTGTCACCTCCTTCCTCGCCAACTGTGACCCAGATGACCTGCACAGGTACACCATGGCAGCCCAGGACCTGGTGATGCGTGCCAGGGGTGTTCTCAGGGACCGAGGCTGGCGTATAACCAACGACCGGCTGGGCTCTGGAGACGACATTTCCGTCTACATCATCCCCCTCATGTATGGTAACCGTCAACCATAGAGCAGATGCTTCTGCAGTGACCCCTGCTATCTCACTTTCACactcctatacacacacacacacacacacacacactcactcatgcaCTCTTGCACGCACACAGACTGAGAACCTCTACTTGTCCTGCTGTGTTCCtctcagtgcagtgcagtgcagtaagGGATTAACTGAATTGTTCAGCAACTCACTGcagtgtacagtgtacagtgttgTTTATACTGGCATGAGAGGATAAAATACAAAGCATTTGTATGCCACTTAATTATGTAACGTATATAGAGATCCTAGTTAGACTGATTCCTGACACTTTCTACATTGCCACTGCAtgatatgtaatgtaatgtttttattatggaTCATTTGACTGAAGTACACTGatttcttctgtttattttttatgccgATTGAAGGCAGAGCTCTTGCTACCCCAGTTTAGTACTGTTCACATGTTA

Function

GO: NA

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85196 lncRNA downstream 69682 9914565 ~ 9916622 (-) True G63136
TU85190 lncRNA downstream 77056 9907553 ~ 9909248 (-) True G63131
TU85180 lncRNA downstream 94546 9891016 ~ 9891758 (-) True G63125
TU85155 lncRNA downstream 336116 9647552 ~ 9650188 (-) True G63107
TU85153 lncRNA downstream 344064 9637688 ~ 9642240 (-) True G63105
TU85235 lncRNA upstream 40887 10073558 ~ 10074137 (-) True G63169
TU85237 lncRNA upstream 41558 10074229 ~ 10074477 (-) True G63170
TU85238 lncRNA upstream 45008 10077679 ~ 10077995 (-) True G63171
TU85242 lncRNA upstream 63428 10096099 ~ 10096842 (-) True G63175
TU85251 lncRNA upstream 101525 10134196 ~ 10135349 (-) True G63183
XM_007237085.3 mRNA downstream 98816 9865360 ~ 9887488 (-) False LOC103036113
XM_007237084.3 mRNA downstream 98816 9865360 ~ 9887488 (-) False LOC103036113
XM_015602384.2 mRNA downstream 98816 9865360 ~ 9887488 (-) False LOC103036113
XM_007237083.3 mRNA downstream 98816 9865360 ~ 9887488 (-) True LOC103036113
XM_015602383.2 mRNA downstream 122285 9850930 ~ 9864019 (-) False fbln1
XM_007232393.3 mRNA upstream 362259 10394930 ~ 10405872 (-) True creld2
XM_007232394.3 mRNA upstream 391918 10424589 ~ 10433454 (-) False zbed4
XM_007232395.3 mRNA upstream 391918 10424589 ~ 10433143 (-) True zbed4
XM_022671332.1 mRNA upstream 1691796 11724467 ~ 11779849 (-) False LOC103026034
XM_022671333.1 mRNA upstream 1691796 11724467 ~ 11759456 (-) True LOC103026034
TU85152 other downstream 363516 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 1812502 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 3248356 6671610 ~ 6737948 (-) False G62484
TU85294 other upstream 282128 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 2287884 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 4752650 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 4961493 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 6552394 16585065 ~ 16585647 (-) True G64387

Expression Profile