RNA id: XM_007232395.3


Basic Information

Item Value
RNA id XM_007232395.3
length 5215
RNA type mRNA
GC content 0.45
exon number 2
gene id zbed4
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 10424589 ~ 10433454 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GgcgctgctgctactgctggtTCTATCGAGCTCCTTCTGTCCTGCTGCCACCCCGGACCTGGTTCTGCCTCGCCTAGCTTGGACTGTGCTGGGCCTAGCTGGGCTACTTTATTATTAACCCTAAGACCAGAGCAGATTAACCCTCGTGGGGAGACTTTACAATGTTACCAGGTCCGGCTAGGATAGATACATTTACTGCGAGTTGCCTCTGTCAGTGCTGGGGATCCATGTGACAGTACGGTAAATTACGattCAACAAAGAGGGCAACTTTTTGACACTTTCCTGAATGGATAAGTCTGGAGTGTCTTCCTTGCACTGCTGTAAATGTTGCTTTAACGGATGATAGAAGAGCCAGCCAAACTGATGACACTTGAACCATTGAAAAGCTGCTTTCATTAAAGATTTCCACTAGCAGAAATCCAGTCTGCTAAAATGGATGGAGAGGAAGAGCTCTCTCAGAAGACTGAAGAAGTGCACCTGGACCATAATGGTTCCTTGGAGAACAAGAGAAAAGAGGCCAAAGGAACCTGTTTAAAAATCGAGGGGCAGGATGGTTATGTATTTAAGTCGTACAGCATGACTCCTCATGAGTTTACAGATGCAAAGGCCTCTCATTCTCCCACTGATACACTGGCTAAAGACTCTTCCTTGTCTTCTTCTACTACTTCTCCACCTTCTTCTTCGTCGTCTTCTTTGTCTTCATCCCTTCTGGGGACACTGGATAATGTATCTTCTCAGGTCGATGGACATCCAGGAGGGAGTCCAGAAGCAGAGAACTGCAGTAAGCAGAGCTCTCCAACTTCTCctgtcattttaaataaaagccaGAGCACTGAATTAGACCAGGACAATTCAGCAAGTGAAACCAGTCTACATATCAAAGAGGAACCAAATGAAATTTGTGAAAGTTCTCAGGAGGATGACAGTTTGTATTTTGACGGTACTGTAGGTCCCTTTGTcacaaaatttactgatgacgACTATGGTAACCTGCTGAGTGGCTATTCCAGTATGTTTTATGATGTTGCAATGGATGCTGTCACACAAAGCCTTCTGTCCTCTATTAGACATCCTCTTAATCCTAGAAAGAAATCTCCTGCCTGGAACCATTTTTTCATATCACCTCGGGATAGTACCAAAGCAATCTGCATGTACTGTATGAAAGAGTTCAGTCGGGGTAAAAACGAGAAAGACCTCAGCACTAGTTGTTTAATGAGGCATGTGCGAAGGGCTCACCCCACTGTGCTCTTACATGACAGTGACTCTTTAAATACGTCCAATTCTGCCTCATCAATATTACCTCCCATTCAAGCACCAAATAACGGAGACCTGGCAGCTAGCATTAAACCCCACCTAAACAATCACACCTCACCGTCCACCTCTTTAGCAGAACCAGCCACAGATGTAGCACCCAAAGAGGCATTGCAAAAGGTCAAGCCAAAAGTGGAAAAGAATGCCAAGACCGACTCTGGCACAGTCCCTTCCCCACATTCCATCAACAACCACAACGATGACGCCATGGATGTCATTGTGACTGACTGCCCGAGCACAGCCCATAAAAGCTCCAATTCTCGAAGGCGTTCAGCTGTGTGGAAACACTTCTATCTGTCTCCAGCCGACAGCTCAAAAGCTGTGTGCATCCACTGCATGAATGAGTTCAGCCGGGGGAAAAATGGGAAAGACCTGGGAACAAGCTGTCTAATTCGCCACATGTGGCGAGCCCACCGAGACATCGTCATTGAAGAAAACGGACAGGGCACCACCATTCCGCCACCTTATACCACGCCGCCAACACTACTGATGAAGGGCCCTTTGAAAATCAAAAAAGAGCCTATCTGTAACTCCCCTGAAAACATATCCGATGGAGTGTTGCCCATCGATGATAGCGAAAGTATGCTTTTAAAGATGGAGCTGAATGACACCTCATATCTCTCTGGACAGGACTCTTCACTCAATGTATCTTTCGACATAAAAAGTGAAAACTTACTTCTGACGTCATCTCCCGACAACTCTGCACAAGGCTCGGGTCAAGACCTGAGCTCCGTTTtccaacagaacaaaaaaattatgaaacGAGTGAAATCGGAAGTGTGGCACCACTTCATCGTCTCCCCTGTTGACCAGCTCAAGGCTTTGTGTCGATACTGTCCTTGTGTCATCAGTCGCGGAAAGCGCGGTGACTTCGGCACAAGCTGTTTGATGCGGCATCTTGTGAGGCGGCATCCAGATGTCGTCAAGAGCCAAAAAAGCACAAGCCTCAAAGACTCTTCACTGCTGGCGCTCCACGATTCTTTCGCTGCAGACGAGGAAATGTCAGCAAGTGCGACTGACAGCCCTGCTAGCGGAAAGAAGAAACACAGTCTACCCATGTTCAGCAAGAAGACGTCAAAACTGTGGAATCACTTTTCTATTTCTACTGGAGACCCAACGAAGGTGGTCTGTTTGCACTGTAACCGCACAATAAGCCGGGGCAAAAAAACAACCAATCTAGGCACTAGTTGCTTATTCAGGCACATGCAGAGGTTTCACGGACACATGCTtgaaaatagtagtagtatctCAGGTGATGTGTCATCTGCTGCACTTGCAGTAAAGCAGGAGCTCATGGACACTTCTGCGTATGTGCAGCAAAATAAGAAATTCGAAGATTGCCACCCAGTTgccaaaaaaatcacaaaactcATCGCAGAAATGCTTGCACTGGATCTTCAGCCTTCGACTGTGGTGGAGAATGTGGGCTTGAACCGACTACTGGATTATCTCCAACCACAGTATTCTGTACCCTCGTCGTCTTACTTCACCAGCACCGCCATACCTGAAATGTACGAGACTGTGAAGGAGGTTGTTCTGACTCACCTCAAGGAGGCAGAGAGTGGAATTATCCATTTCACAACAAGCATGTGGGTGAGCAGTCAAACTCGGGAATACCTGACTCTTACAGCTCACTGGGTGACGTTCGAGTCTCGTGTCCGACCTCAGGGCCAAGACTTCCACTGCTCAGCCCTGCTTGGTGTCTCCCCAATAGACTGTGATTACAATATGTTGAGCATTCAGAAGCAGCTTGAGTATCTTTGGGACACATGGATTGCTTCCTCAGGCCTGAAAATTGGATTCACTGTAACTGATAATCAAGCCATAGGAAATGTGCTGAAGGACAGCAATCACGCCATCATGCACTGTTTCGGTCACAACATAGACCTCATTGTTAACGAAGCCATAAAGAGTCAGCGGATGGTCCAGAACTTGCTAAGCATTGCACGGAAGATCTGCGAGCGGGTACATCGCTCAGCAAAGGCAAAAGAGAGACTGGCGGAACTGCAAAAGGAATACAACTTGCCTGAAAATCAGCTGGTCCAGGATGTTCCCTCCAAGTGGAAGACCTCATATTTCATGCTCGAACGTCTGGTCGAGCAGAAGAAAGCCATTGATGAGTTGTCTTTAGAGTGCAACTTCAGGGAACTTATAAGCTGTGACCAGTGGGAGGTGATGCAGTCTGTTTGCAATGCTCTGAAGCCCTTCGAGGTGGCCTGCCAGGAAATGAGTGCTCACACTTCCACCCTTGGCCAAGTCATACCACTCATTCATATCCTCAACCGCAAGATCGACATGCTCTTTGACGAGACTATGGGAATCGACAACATGCTCAAGTCTCTGAAAGAGGCCATGGTGACCAGAATGTCTCCCATACTTCACGACACACGGTATACCTGGGCAACCATGCTGGACCCTCGGTACAAGACCTCCCTGTTCACTGAGGAGGAGGCAGAGCAGTGCAAGCAGGACCTCATACGAGAACTTGACAAGGTATCACTAGCTACTACCTCTCCAGACACTAAAACTCAACTGTCCAATGGCTGCGTTGAGGTTCCAGCTTCGTCAGACGGCCCGTCCGGGAAGAAGGAAAACCTCTGGGCCCTGATGGATGGCATCAGGCAAAAGATCAAGCAAGAGGAGAGACCAAAGTCCCCAGATCTCATCGTTGTGGAATATTTGGAGGAAGAGATTCTTGACCAGAGCTGCGACCCTCTGGACTATTGGAATCTTAAAAAGTTCCAGTGGCCTGAACTTGCCAAAGTAGCCGTACGTTATGTGGGCTGTCCGCCCAGCATTGTACCAGCAGAGACTCTGTTCAGCACGTCGAGCGCAAACTGTGCCCTGAGTCAGTCCCGACCATTGCTAGAAAACCTTGAAGGACTCTTATTTTTAAAGGTCAACCTTCCTTTGGTATATTTTCAATACTGATGACtctctttttaaatgtatgcaAGCTTATTTCTTAGACACTGATAAGAAATAGACCCTTACGAAGGACCAATTCACTACTGAGATGGCCCTTTAAGATATTTTACACTGAGGTTTAGATTTGGTATACAGATCGTAGAGATCCAagttaatttaaagaaaaaaaaagaaatgttttgtaTGTGTACTACTGTTCAACACTTGATAACTGGAGTTAGTCTTACACCAGGTGAAAAGTGTTTTCAGGGAGGGATTTAGGAAGGGTGGGTAGGTGGGCTTTAGGAAGGGTTGGTGGGTTGGTTAGTGGGAGGGGTTTAGGGTAAGGGGAGGAGAGGAGATGCTTAGCTGTAGGGATTGTTGTGTGTTGCTgttcactttttttgttgtttttatggcCAGATTGttctgttcttctctctcttcttgtgCCTTATATAAACTACTTCAGGTCAAAATGCTGTATATATTATCCGATGTGCACAACACATCATGGTCTTCTGACGTAATATTGACTATGTAAAATAGAACGGGATGCTgaataccttttttttactgctattattattattattattattattattaaataatgaacACATGGCCCAAAATTAAATGCTGTGACTGaaagatgtttaaatgtttgtaatttaatattttcattgtGATATCGTGGCTTATGGTACTGTCCATTAGAGTTAGTTTCTTTTAAACGTTAAAGTTTCTTATGTAATATAATGCTGTAATTTCAGGGTGGGCTATCTGTTTTGATCATGAATTTTGCAAGCACAAAtgtctcttttatttttgtttgtttgttttctggggTTTTAAATTATGGGTCAATGTCAAGttaatgtacattttataaataacaaTTTCCAAAACAATTTTTTGCTAAAGAATAAGCATTCAGACTGGAACCATGCAATTTTTGTGGTTATTTGGTAATAAAAGGTTTACCCTTTAATCATT

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K24640 ZBED4; zinc finger BED domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85293 lncRNA downstream 108075 10314799 ~ 10316514 (-) True G63217
TU85296 lncRNA downstream 109956 10312758 ~ 10314633 (-) True G63219
TU85258 lncRNA downstream 229803 10194576 ~ 10194786 (-) True G63190
TU85257 lncRNA downstream 237162 10187172 ~ 10187427 (-) True G63189
TU85251 lncRNA downstream 289240 10134196 ~ 10135349 (-) True G63183
TU85336 lncRNA upstream 131532 10564675 ~ 10565626 (-) True G63247
TU85337 lncRNA upstream 157203 10590346 ~ 10590610 (-) True G63248
TU85344 lncRNA upstream 196986 10630129 ~ 10630460 (-) True G63255
TU85348 lncRNA upstream 225061 10658204 ~ 10658424 (-) True G63259
TU85370 lncRNA upstream 1197499 11630642 ~ 11635515 (-) False G63265
XM_007232393.3 mRNA downstream 18717 10394930 ~ 10405872 (-) True creld2
XM_007232390.3 mRNA downstream 391918 9986304 ~ 10032671 (-) True LOC103042295
XM_007237084.3 mRNA downstream 537101 9865360 ~ 9887488 (-) False LOC103036113
XM_022671332.1 mRNA upstream 1291324 11724467 ~ 11779849 (-) False LOC103026034
XM_022671333.1 mRNA upstream 1291324 11724467 ~ 11759456 (-) True LOC103026034
XM_022671334.1 mRNA upstream 1347412 11780555 ~ 11805577 (-) True LOC111192951
XM_022671342.1 mRNA upstream 1391703 11824846 ~ 11965807 (-) False LOC103026753
XM_022671341.1 mRNA upstream 1391703 11824846 ~ 11965807 (-) False LOC103026753
TU85294 other downstream 13358 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 801801 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 2250787 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 3686641 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 3701059 6722102 ~ 6723530 (-) True LOC111192868
TU85708 other upstream 1887412 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 4352178 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 4561021 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 6151922 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 6449192 16882335 ~ 16887903 (-) False G64492

Expression Profile