RNA id: XM_007232707.3


Basic Information

Item Value
RNA id XM_007232707.3
length 1807
RNA type mRNA
GC content 0.41
exon number 4
gene id guca1a
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19732755 ~ 19738419 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCCCAGTGTAACCCAGCTGTGAGACGCGAGCTCTTCGCCTGCACAGCAGAACCACTGGGCTTCCAGAGCTTCTACTGATCCATTcctgatcagatcagatcagatccaTACTCTTCAGTTCTCCTTCTGCTCACTCCTCCAGTCCTCAACTCCAGTGATGGGGAACTCTACCGGCTCCACCGTGGACGACCTGCAGGCTGTGGAAATGCACCTGTGGTATAAGAAGTTTATGACGGAGTGTCCGTCGGGTCAGCTCACGCTGCACGAGTTTAAGCAGTTTTTCGGGCTGAGGGGTTTGGACCCGGAGGCAAACGCATACATTGAACAGATGTTCCGAACCTTTGACATGAACAAGGATGGGTACATAGACTTCATGGAGTACGTGGCAGCTCTGAGCCtggtgatgagaggaaagatgGAGCACAAGCTGCGCTGGTACTTCAGACTGTACGATGTTGATGGCAATGGCTGCATAGACAGACACGAGCTACTCAACATCATAAAGgcTATCCGAGCCATTAATGGCAGTGATGCACAGGAGCTCTCTGCAGAGGAGTTCACAAACCGTGTCTTCGACAAGATTGACGTTAATGGCGACGGTGAGCTGAGTCTGGAAGAGTTTGTGGAGGGAGCTCGCAGTGATGACGAATTCATGGAGGTGATGGTGAAGAGTCTGGACCTCACGCACATCGTCGCCATGATCCACAACCGCAGACACAgcatataaacattaaatacaaCCTTTTCTCACTATAAGTACTGGCAGCAAGCTAAATGAGCCCAATAAGTGTAAATTACATTTCTTAGTAACTAAGAACAACATCCATTTAACTGCTGCCTAGATTACCAACTACAGAATGActcaaaacaacataaaaaaagaacgATGTTTGGTTACTTAAGCAACAATGGTGCAAAAGACTTGGCTCATTGGTCAAGAGCAACAATCATTTGTTGCATAGCAAAAGATGCCCAGATAAAGTAGCTCACAACAAGCAGTTGGTTGTTGCTTAGCTTACAGGCctcagaatgaaaaaaaaaaaaaaaaaaaactttcctagGTGACAACAATCCTGCCTGGAAATGGTCAAAAACAACAATTGTTTTTTCCAAAGTTACACCTCTCATTAACCTAGCCCAAAACAGAATGAACAAATTTACCAGTCAAGAGCAATAATGatctctgtttatttgtttgtttcaataaaaaggCTGGGATGAAAGTGAAGGGGTGCATTCAAGATCTGGAAATGGACCACATTAACATTACTGACTGTTTCCACGATATAGCCTGTTAGCAAGCCACATGCTAAAGCTGTGAGGGAAAAGAATCAGTAAGTTAATGTTAATGTCCATCTGCTTAAAAATCTAAACAGACTTAAACAGTCCACACTTTCGGCCAAATGTCTtcaatatttatgtatattttttatgtatttaattattattatattaatacactGTTACTTTACTCTAGCTTATTAAGTGAAAatagcttaaaataaaaatgtttctacTGTTATTCAGGAAAAACAAAAGCTCAGGTCAAGAATGTTTACTTCTGTATAGTAGGTAGCCTCAACGGCTAAAGGCTAGAAATCATAATGTAaagtgaaatgttttaaatgtatttttttttgtacattttcaaaCAAAATTGGGTTGTTTTGTTAAATTACAACTCTTACAGTGTCCGTTCTGTAAATCAGAGCTAGTCCCAGTATTGATGTGCCTTCTGTAACAGCACAACAGGACGTTTGGTTACGTGGACGACCTGCTGATGTTGATCATTTCTATAATAAAA

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0005509 calcium ion binding molecular_function
GO:0008048 calcium sensitive guanylate cyclase activator activity molecular_function

KEGG:

id description
K08328 GUCA1; guanylate cyclase activator 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88204 lncRNA downstream 60638 19669547 ~ 19672117 (-) True G65339
TU88125 lncRNA downstream 120877 19610935 ~ 19611878 (-) True G65277
TU88124 lncRNA downstream 122266 19609454 ~ 19610489 (-) True G65276
TU88127 lncRNA downstream 126254 19606290 ~ 19606501 (-) True G65279
TU88121 lncRNA downstream 139642 19592294 ~ 19593113 (-) True G65273
TU88207 lncRNA upstream 8466 19746885 ~ 19749668 (-) True G65342
TU88227 lncRNA upstream 29763 19768182 ~ 19769869 (-) True G65354
TU88215 lncRNA upstream 38499 19776918 ~ 19849574 (-) True G65347
TU88238 lncRNA upstream 54364 19792783 ~ 19793144 (-) True G65359
TU88249 lncRNA upstream 65887 19804306 ~ 19805426 (-) True G65363
XM_007232709.3 mRNA downstream 18312 19665559 ~ 19714443 (-) True lhfpl3
XM_007232715.3 mRNA downstream 127030 19600248 ~ 19605725 (-) True ndufb2
XM_007232714.3 mRNA downstream 127037 19600248 ~ 19605718 (-) False ndufb2
XM_022671463.1 mRNA downstream 217372 19409298 ~ 19515383 (-) True sema3c
XM_022671457.1 mRNA downstream 413338 19305987 ~ 19319417 (-) True cdr2l
XM_015601150.2 mRNA upstream 56735 19795154 ~ 19799583 (-) True llph
XM_022671482.1 mRNA upstream 315532 20053951 ~ 20064790 (-) True acss3
XM_007232807.3 mRNA upstream 444675 20183094 ~ 20189701 (-) True myf5
XM_007232806.3 mRNA upstream 463679 20202098 ~ 20205655 (-) True myf6
XM_022671494.1 mRNA upstream 784436 20522855 ~ 20810711 (-) False syt1
TU88123 other downstream 127073 19600214 ~ 19605682 (-) False ndufb2
TU88053 other downstream 448723 19280302 ~ 19284032 (-) True G65231
TU88002 other downstream 709097 18898185 ~ 19023658 (-) True G65184
TU88001 other downstream 813233 18898185 ~ 18919522 (-) False G65184
TU87843 other downstream 1082412 18643371 ~ 18650343 (-) False LOC111192971
TU88246 other upstream 59260 19797679 ~ 19799602 (-) False llph
TU88823 other upstream 1891539 21629958 ~ 21684828 (-) True G65803
TU88824 other upstream 1891702 21630121 ~ 21684828 (-) False G65803
TU89155 other upstream 2552266 22290685 ~ 22291682 (-) True G66081
TU89874 other upstream 4769415 24507834 ~ 24508281 (-) True G66619

Expression Profile