RNA id: XM_007232708.3


Basic Information

Item Value
RNA id XM_007232708.3
length 1958
RNA type mRNA
GC content 0.48
exon number 15
gene id orc5
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19715788 ~ 19728171 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACACGTGTtcacaataaatacattgttaTTTAGAAATATACAGAAACAAGCGATTGAAACTCGCTACTACAAATCTCCGCGTCTAAAAACTACAACTCCCAGCTTGCGGATGTGACGTCACCTTGGCGGGAAAGTGAAGCAGCGTGTGGAtcctgtgtgaatgagtgtgtgttggggtttctggctgagtgtttataaaatTGAGGAGGATGCTGGCTGGACTGCAGTGTCCCGGCTATCCTGAAGCCAAACTAAGCTCTGTGAGCGAACGGCTTCCCTGTAGAGAGGGACAGGCAGGAACGCTGCTGGCTCTAATGGGGGAGCCGGAGCAGTACTGCTTCCCCTCCATCTTTATCTATGGCCACCGAGCCACGGGGAAGAGCCATGTGATCCTCACCCTGCTGAAAGAACTGGAGgttcCTCATGCAGCGGTGAGCTGTGTGGAGTGTGTATCTGCAGGGCTGCTGTTTGAGCAGGTTCTGTTAGCGATGTTTGGTTCCGAGTCGGCCACTCTGCTccctcgctctccctctctctcagacttcgTTCGGATCTACAGGCAGTTCTGCGCTCAGGAACCGGCCCAGCAGACCCGGTACATTGTTCTGGAGAGAGCGGAGCTGCTCAGAGATATGGAAGCCAACCTGCTGCCTGGACTGCTACGTCTACAGGAACTGGTGGATGATAATGTGACCGTCATCCTGCTGAGTGAGATCGTGTGGGATAAGTTTCGGCCGAACACTGGCTGCTTCGAGCCTCTGCTGCTACACTTCCCTGATTATACTAAAGCGGAGCTGCTGCAGATTCTGTCTCTGGACAGTAACCCATCCTACTCTCCTGAACTCTACTCCTCCTACATCAACATCCTGCTGGGGGTCTTCTACTCCGTCTGCAGAGACCTGAGAGAACTACGCCACCTGGCTGCCCTCAATTTCCCCAAGTTCTGTGAGCCTCTAGAGAAGGGAGAAGCTAAAGAGAGCGACACCCACAAGCTCTGGAGGAACATTGAGCCTCACCTGAAGAGAGCCATGCAGACCGTGTACCTGAGAGAGGTGTCTAGTGTTCAAtgggagcagcagcagatgGAGGAGAAGGAGGCCACAGCTCTTAgagGTTTATCAGCTCATGCTCATGTGGAGTTACCGTATTACTCCAAGTTCCTGCTGATCGCGGCATACCTGGCCTCGTATAACCCGGCCCGGACCGACCGACGCTTCTTCCTCAAGCATCATGGGAAAATTAAGAAAACCAATTTCTTGAAGAAGCATGAAAAAACTAGTAACCATCTGTTGGGACCGAAACCATTTCCTCTGGACAGACTGTTGGCCATCTTCTACAGTGTGGTGGATAGCAGAGTGGCGCCAACTGCCAGCGTCTTCTCCCAGATTTCCTCTCTGGTCACCCTGCAGCTCCTCACCCAGGTCGGACACGACGACCAGCTGGACTCTCCCAAATACAAGTGTGCTGTTTCACTGGACTTTATTTCTGCTAtctccagGACCGTGAGCTTTGATATTGTGAGATATCTGTATGACTTCCTGTGAAGAATCTGACCACTGATTGGACAGTGTTTTGGGATCACCCTGATGGACAGATCAGCAAGTTGGCAGGAAAATGGACTACAAGCATTTTAATTGGCTGATACCTAAGACATGGAGACCATATTTCATGACTGTTGGATAATGTCATCTTACCTGCCATCAGATTTACTTTAGACCTGATTTAGGTGTAATAAAGACTTCCTGTAGCTACTTAAACTTCATGCAGaggtacatatttatataatgtgttttttacttGGACATTGCATTTCTGATTACAGCTAATGTTTAGCTGAAATAAGAGCCATTATATGTTTGTGATTTTGGTGATAGTGAAATTTTCACTGTAAACATTGATAaacaatttgtaaaaaaaaataattaataaatgactaaatattgcatttacattttca

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0000808 origin recognition complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K02607 ORC5; origin recognition complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88000 lncRNA upstream 103916 19610912 ~ 19611872 (+) True G65183
TU87999 lncRNA upstream 105267 19609465 ~ 19610521 (+) True G65182
TU87992 lncRNA upstream 114150 19600888 ~ 19601638 (+) True G65176
TU87995 lncRNA upstream 121565 19593911 ~ 19594223 (+) True G65178
TU87953 lncRNA upstream 458205 19254361 ~ 19257583 (+) True G65150
TU88156 lncRNA downstream 2306 19730477 ~ 19730879 (+) True G65301
TU88161 lncRNA downstream 15713 19743884 ~ 19747191 (+) True G65306
TU88168 lncRNA downstream 75004 19803175 ~ 19805102 (+) True G65310
TU88170 lncRNA downstream 76455 19804626 ~ 19806600 (+) True G65311
TU88293 lncRNA downstream 423062 20151233 ~ 20151557 (+) True G65404
XM_007232710.3 mRNA upstream 55268 19615610 ~ 19660520 (+) True kmt2e
XM_007232711.3 mRNA upstream 55268 19615610 ~ 19660520 (+) False kmt2e
XM_007232712.3 mRNA upstream 55268 19615611 ~ 19660520 (+) False kmt2e
XM_007232713.3 mRNA upstream 55268 19636666 ~ 19660520 (+) False kmt2e
XM_007232716.3 mRNA upstream 117739 19569986 ~ 19598049 (+) True LOC103040257
XM_022671465.1 mRNA downstream 21139 19749310 ~ 19779463 (+) True golgb1
XM_022671466.1 mRNA downstream 21139 19749310 ~ 19779463 (+) False golgb1
XM_015601151.2 mRNA downstream 52492 19780663 ~ 19794325 (+) True LOC103037311
XM_022671470.1 mRNA downstream 111024 19839195 ~ 20054048 (+) False ppfia2
XM_022671471.1 mRNA downstream 111024 19839195 ~ 20054048 (+) True ppfia2
TU87956 other upstream 374909 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 436973 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1092289 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1996360 17690209 ~ 17719428 (+) False G64698
TU86974 other upstream 2839847 16873087 ~ 16875941 (+) True G64449
XR_002650196.1 other downstream 52492 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1228964 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1296004 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1901691 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 3211431 22939602 ~ 22949192 (+) False ccdc167

Expression Profile