RNA id: XM_007232713.3


Basic Information

Item Value
RNA id XM_007232713.3
length 7182
RNA type mRNA
GC content 0.54
exon number 23
gene id kmt2e
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19615610 ~ 19660520 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTAGACTCCTATAATATACCTGGTTTActatgagcacactgaccagcGATTaattaacctcactcacaagataaaacctcacaacTTGTACATGTGTGGGCGAGAATTCTCAAGCcgtttgtgtgtgagaatgtgaatGCATCTCCCTTGCTCTTCTcttttgtacacacacacttggacacacacacaccctctccaGGGCACGCCTCCTCAGGTGGTCATGCACTTTCACTTTGACACTTGAGCTGCTCTGCAGACGCGGCAAACTGTTTGAGGAAGTGCATGTACGATAGACAGACCTAGAGAGTGAAAGAGCACGAGGAGGAGAGGGAATTCGGGTAGAGGACGTCTtcagagacagagcaagagtgTCGAAGAAATGCATCAGGCTGTCTACTGCTAatttaatatctttaatctCACTGTACTCTGAGTTCTGTCAGCAGTTAGTGGCGACCCGAGTCTGTGGAGGCCAGCCCTGTGGTAGTGGAGAAGTCCAGCTACCCTCATCAAATCTACAGCAGCTCGCACCATTCGCACAGCTACATCGGCCTGCCGTACGccGATCATAACTATGGGGCACGTCCCCCGCCCACACCGCCGGCGTCCCCTCCTCCCTCGATGGTGATCCGGCCGGGTGAGGGTGTGTTTCTGTCCGGCGGCCGAGCGGGTGAGGGTGTGTACGTGCCGGGTGGTCAGGACGAGGCGTCCAGGGGAACCACGCTCAGCACCTCGGAGGACGGCAGCTACGGCGCAGACATCACGCGCTGTATCTGTGGCTTCACGCACGATGACGGCTACATGATCTGCTGCGACAAGTGCAGtgtgtggcAGCATATAGACTGCATGGGGATTGACCGGCAGCACATACCCGAGACCTACCTGTGTGAACGCTGCCAGCCGCGTAGCCTGGACCGAGAGCGCGCCATCCTGCTGCAGACCAGGAAACGAGAGAATATGTCTGACGGGGACACCAGCGCTACAGAGAGTGGTGACGAGGTTCCGCTGGAGCTTTACACAGCTTTCCAGCACACGCCCACCAGCATCACGCTCACCACTGGCCGCCTCGGCAACAAACAGGCCGACAAGAAACGAAAGAAGAGCGGAGACAAGGAGCCTGCGGTGCCGGCCCGCGCCAAAAAGGCATTTCGAGAAGGCTCCAGGAAGTCCAATAGAGTAAAGgGCTCTGCTCCGGAGTGTGAGCCAATGGAGCCTCCGTCTCTGTGGGAGAATAAGGTGAAGTCGTGGATGGAGAGATACGAGGAGGCCAGCAGTAATCAGTACAGTGAGGATGTCCGGCTACTGCTTCGTGTTAAAGAGGCTCGAGACGGGAAAACACtcgcctacacacacactgctgccttTAAACCGCCTGTAGAGAGTCACGTTCAGAAGAACAAGCGCATCCTGAAAGCGGTTCGGGACCTGGCTGCAGATTCACTCATTATCGAATACAGGGGAAAGGTCATGCTCCGGCAGCAGTTTGAGGCCAACGGTTACTTCTTTAAAAGGCCGTACCCCTtcgtgttgttttattccaagtTTGACGGATTGGAAATGTGTGTAGACGCTCGCAGCTTTGGAAACGAAGCACGTTTTATACGCCGGTCCTGCACCCCCAATGCAGAGGTGCGGCACGTAATAGAAGACGGCATGTTGCACTTATATATCTACTCCCTGAGGTCCATCTCTAAAGGCAGTGAGATCACCATCGGTTTTGACTATGACTATGGCAGCtgTAAATATAAGGTGGACTGTGCGTGTGTGAGGGGGAATCAGGAATGTCCCGTGCTGAAACACAACCTAGAGCCCACAGAGAACCTGGGGTCGGGCACGCGGCGCCGGGGACGAAAGGATAAAGAGCCGGTGGGACGGGATGACAGTGGCCAGAACCAGAACCTCACGCTGGACTGCGACCTTCCGAAAGGGAAGACGGGCAATGACGGCAAACAGCGGAAACTCTCACCCCTGCGAGTGTCCATCTCCAACAACCAGGATCCTGAGTTAATAGAGGATCTGGAAGAGAAAACCTCCGTTAGCAATGAAGTAGAGATGGAATCAGAGGAGCACATGGCagagagaaggaggaagatgACCCGTGAGGAGCGGAAGATGGAGGCCATCCTGCAGGCATTTGCACGTATGGAGAAGAGGGAGAAACGGCGAGAGCAGGCTCTGGAGAGAATCGGCACCAAAGGAGAGGTTGGAACACGCAGTGATATCAAAGAAGAACCTCCTGCTACACCTGAGGCTGAATCACCTGCTACTGTACAACTGcccTTGCTGGAAACAGTGAAAGAGGAACCGGGTCAGAAGCCGGCGAAGGTTAACCGGAACAAGCAAAGGAAGAGTTTCTCCCGGAACCGGACGCACATCGGCCAGCAGAGGCGCCGCACACGCACTGCCAGCGCCTGCTCCGACTTACCGCCCGGGTCCCCCGGAGACCTTCTGGAGCCGTCAGCAGGCGAGACGCAGGATGGGGAGACTCCCTCTGCGCCCGAGGCTGATGCCCCGCCTTCCAGTGCCCCTGACGCCAGCCCACCACACAGTGGTTCACCCGCACCAACCTGTCGCAGTGGGCAAAAATACCCAAAAACTAAAAAGCACTTAGTGAGTGAGTGGATGGGTGTGGAGAAGCAGGAGCGTGTGAGTCGGACCCCGGAGCCGGTACCGGAGCGTCCGTTGAGGATCAGCAGTGACCCGGAGGTTCTGGCCACTCAGCTGAACTCCCTGCCCGGTCTGTCTTGCAGCCCCCACGTTTACAGCACGCCCAAGCACTATGTCCGCTTCTCCTCACCATTCCTGGCCAACCGCAGCCCTAGTGCCCCCGGGGTGCCCACGGGCCGCCGCCGCTCCAGAGAGCTTCCAGAAACACCCCCCACTTCTGGATCCTGTAAAAAGCGTTGGCTAAAGCAGGCGTTAGAAGAAGAGGGCTCTGTGAGTCCAGGGAGCCGTACCGCTCTTCTAATGCAGAGTGAGGGTCCGCTCAGCCCGTCCATTAATGGAGAGTTGGACAGCCCACTCCCGTTCAATGGAAACTGCCCTCTATCAGAGCTGCCCACACCGCTGAAAAAGAGGCGTTTGTGTCCGCTGGACGCGTGCATGTCTGAATCGTCCACCCCATACACCTCGCCATGTGCGACCCCGACACGGGCAGAGCCCTCGGACACGCCAGGGACGCCTCAGCTGCTGAACACCCCGCCCCGGCTCCGCCCTGACGACGCCAGCACAGAACCttctacacccacacacaccaacatCAACACGTTACACACCGCGCCACAGGAGaGCGAGTCATCGCTAGACAGCTCACCAGAGGGCAGTCGAAGACCCAGCACACATGAGGCCGAGCGTCCTCCCTCGCTGTTGGCCTCCCCAAGCGTGCGGTCGCAGGTTTCTGAAAACCTCACCCAAGAACCAAGGACAATTCCTGCAGGCTCTCAAAGCCCGGACCCCTCGCTCCCGGAGCCGCAGGACGCCGCAGGAGACGAGGGCATGGAGCCTGAAAGCAGCACAGAGACCCCCACAACCTCCGAGCCCCCTGCCTCGTCGTTCCTCCCCTGGATGAAGAGCCCAGAGCGTGGCGGCCTATCCTTCTCTCCCGTTAACTCCAACCTGCGGGACCTCACGCCGTCCCACACGCTGGAGATCGGGGCGTTCAGGCCTGAGGCTGCAGCGGCAGGGGGCTTCAGTGAGGGAGCGCCATATTACCCCTGCAGTGAGGAGGGGGGTGGCATGGCCTTCACGCGATCGCTTAGCGTTGATGGAACAGAGGGTGGGGGAACCTCTCAGAACCCACCACAGAAGAAAAAGGTGTCTCTGCTGGAGTACAGGAAGCGGCAGCGGGAAGCCCGGCGCAGCGGCGGCTCCAAGGCGGAGTGTAGTTCTCCTGTTTCCACAGCGCCCCCGGTGGACGTTTTCCCTATTGCTGTAGAACCAGCCCCCGAGGCCACGCCCCCTGCAGCTCTGCTGCCTCCCCGGACCCCCCAGCCTAGTGACGACCCTGATGCCCCCCCacagggggagagagaggggggcgaAGGACAGTGGACCTCTTCAACATCGGTGGAGCAGGCCAGGGAGCGCGGGTACCACAGGGCATTATTGCTGAGTGACCATCGCAAAGACACAGatggTAGCGAGTCGGAAACTGGTGAAGCTCCAGTGAGGGAATGCCCGTCACCCAAAAGCTGCAAGAGTCCCTCAGCACACACATTCTGTTCTCCAGGCTCCAGCGCGGCGCCCCCGCCATCCTTCCGCTCATCTAAAGAGGAGGACAGCGACCCTCAGTCTCGCCCCCCGGCCCAGCCCCAGCCTCCGTCCGTCCAGCAGCCTGCCTCCAAGCCTCCTGTCACCAAACCTGCCCCTCTGACCCCCAGCAAGCTCCACTGCAGCACTTCCGCCGCCCCCCAGGGTCACTACCCCACCCCCTCGCTGCTCTCTTCTCCGAAACCCCAGCCCCAGGGTTCTCCGTATCGCGGCCAGAGGGCGTTTCTGTCTCCACAGCCTCAAAACCAGCAGCCGCAGGCTTCACCTGGACCCGCAGCGTTCTCACAGTACAACCCACAGAACGCACCGCCTCCGCCCCCTCCACCGCCTCCGGCACCTCCTGCCACGGCCACCTACTTCCAGACGCAGCCTTCTCCAACCACAGCACCGTTCCCCGGGCTCAAAGCAGCCGTGACGACCCCGTTCCCACCTGGATCCCAGCCGCTCCTGCAGCCCCACCACACCATTCACTTTCAGAGTAATGcagctccacctcctccacccccaccacctccaccacacccTCAACCAGGCCCCACCCTTCTGCATGTCAACCTCCAGCCTCCTCCTATACAGCAGCACCagcttcttctaagccccgcccctcctcCGCCTCCTCCCCCGCCCCCCCAAAGCCAGAGCACTCAACCTTCCATAGTGCAGCAACCCAACACCAGCACCTTGCTGTCAATCAAgcaagccccgcccccaccacCCCTCCCACCTCCACCGCCGGCACCTTCTAGTGGCGCACCGCCGCACCCTTTTCAAAACATGGCTGCCTTCCAACCCACGCTAATCCACCAATCAGCAGCAGCCACCAATCCCTCAGTACCACCCTCCACCTATCAACAGACTGTGTTACCACCCCCTCCTCCACCGCCTCCTCAACAAACCCAGCCCCCTCAGTCCCCATCCAATCCCAACGCTCCACAGATTAACAGCGGCAACCGGGGGCCCCCTCCTCCTTCTTCGGCCGCCTTCCATAACGCTGGCTACATGGGAACGGGGTGGCACTGACCAAGCCCACTTTACTTGCCCTGGAGAGACTCACCTGGAGAGAACCAGGCAGTGTGGACACACGGTGTAAACATAGGCAATCTCGACGTTGGctgtaaatattattttctatgAACCTTTAAACACGGCCGAATGAAAAACAGGAACGGGGCGGAGAAGAACCGGAACCAGAGAAACCCTTTCAACAAATAaacgaaaataaataaataaaaaaaacttttaaaaatatgaaacagAAAACTGTAAACAATCCAGAAAGAGAGACTTTCTGTAAACAAAGAAACTAAGGTGGATATGATTGATTAGTGGTGCTTCATCACTTAGCCACACCCCCTTTCCCACAGGCCCCCCCACTCAGTTTCTTTCTCCTCGTCTACACTTctgttatttgtctgttttacccctcttcttcttcccttcctgtttttattgttttcatttctctgttttttgctTTCTATGGATCTCTTGTCCACacccctctttctctttgtttttagacctttatcattataattttttttttgtttgtttttgtctgtatgATGGACATTCCATTTCCCATCCTTTAGCCCCCCtcagcatttatttgtttatctagtggTTCATTTATAGCAGAAAGAAAAGCTTTTTTgtatagagagaaaaaatacagaattattattttttttaatcctccATGTAacgagaaaaacaaaagaaaatatctgCACGGCTGCGGAAGTGTCCGGGAGAGCCCTTTGTATGGTAGGCCGTTTCAGTGCTCCAGAGTGTGcacttgagtgtgtgtgtgtgtgtgtgtgtgtggctgtgttcaGATTGCAGGCAAATGGGATTTTATTTTCAGATCAGATCTGTTGAGAGGACTCTCCTCACTGTCATTTTAagtgatcagatcagatttgctTGTCTAGACATCACAAATGTGGGTTTGGTGAGGTCGTTGTTTTTGTGTTGCAAGTGACACAAAAGAAAACACTTTGAATCCAGTTTgactgtgttcagactgccagcTCAAATCTGTATCCAGATTTATGTTTGACATTCTGGACAGTAAATCGAATGCAATTTACACAAGAATGtggtttaaaatgtgctttCAGTCATGCACCCCCGGAGGGCACAGGAGGTGGGATTGGTTAAAAGGCTGGGGTTTGCTTAATTGACATTAGTTACACCATGGAAGGCTGAGCGCTCGATCTAGATCAATTCGGATTCAGGgtggcagtgtgaacacagcctTAGAGTGAAAGAACACAGAAGAAGGGTTTGTATGCACTTgtttgtctatatatatatgtgtgtgtgtgtgtataaggcGAGGTAAGGTAAGCCAGGCTCGGTCGGCCCGTGCGGGGGGGATGTTCCTGTCGGCCGTAAGCGgtttatttttgaatatcaATGGTTATTTGTAGAAAGTGTAATTTAATGTATAGGTGGTCTACTCGCGCTTTCTCCAGAAACAGGTGTAAATATgggcttcttttcttttctacgCTTGTACAATTCGCTCCCATCCCATTTTTGGAATAAGGTTGTAAATATGAGCGGCTCttggcaaaaaaagaaaaacagacagagtaAAACAGCTGAATGTTTCTGTGACCGTAGcactatttttatttccttCTCTCTGAATTTATTCAATttgtctcttttattttttattattcgtgtgtgtgtgtgcgcgtgtgtgtgtgagtgcgagtgtatgtgtgtgtgaagagcagacgctcacagacacagcactGGTTGGATATTTTCATGGTTCATTATAATAAATCACTGTAATGACAGTTTTATACCACCTGGCCTGTTCCGAGTCTTTCTGTGTCTTTCTACCACATTCTGATCAGTTTACTTGCCTGAAAGTAAATGGAATCCATTATGAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88000 lncRNA upstream 24794 19610912 ~ 19611872 (+) True G65183
TU87999 lncRNA upstream 26145 19609465 ~ 19610521 (+) True G65182
TU87992 lncRNA upstream 35028 19600888 ~ 19601638 (+) True G65176
TU87995 lncRNA upstream 42443 19593911 ~ 19594223 (+) True G65178
TU87953 lncRNA upstream 379083 19254361 ~ 19257583 (+) True G65150
TU88156 lncRNA downstream 69957 19730477 ~ 19730879 (+) True G65301
TU88161 lncRNA downstream 83364 19743884 ~ 19747191 (+) True G65306
TU88168 lncRNA downstream 142655 19803175 ~ 19805102 (+) True G65310
TU88170 lncRNA downstream 144106 19804626 ~ 19806600 (+) True G65311
TU88293 lncRNA downstream 490713 20151233 ~ 20151557 (+) True G65404
XM_007232716.3 mRNA upstream 38617 19569986 ~ 19598049 (+) True LOC103040257
XM_007232717.3 mRNA upstream 38617 19569986 ~ 19598049 (+) False LOC103040257
XM_022671462.1 mRNA upstream 237446 19368514 ~ 19399220 (+) True cd36
XM_022671459.1 mRNA upstream 331209 19286835 ~ 19305457 (+) True arhgdia
XM_007232708.3 mRNA downstream 55268 19715788 ~ 19728171 (+) True orc5
XM_022671465.1 mRNA downstream 88790 19749310 ~ 19779463 (+) True golgb1
XM_022671466.1 mRNA downstream 88790 19749310 ~ 19779463 (+) False golgb1
XM_015601151.2 mRNA downstream 120143 19780663 ~ 19794325 (+) True LOC103037311
XM_022671470.1 mRNA downstream 178675 19839195 ~ 20054048 (+) False ppfia2
TU87956 other upstream 295787 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 357851 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 1013167 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1917238 17690209 ~ 17719428 (+) False G64698
TU86974 other upstream 2760725 16873087 ~ 16875941 (+) True G64449
XR_002650196.1 other downstream 120143 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1296615 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1363655 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 1969342 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 3279082 22939602 ~ 22949192 (+) False ccdc167

Expression Profile