RNA id: XM_007232717.3


Basic Information

Item Value
RNA id XM_007232717.3
length 4935
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC103040257
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 19569986 ~ 19598049 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACCCTGCGCTCGGCCGCGGAGAGGGACAGGAGAAGATGGCTGCTGCCCAGCTGTACTGTGTGTGCCGGCAGCGCTACGATATTAGCCGGTTTATGATCGAATGCGACATTTGTAAGGACTGGTTTCACGGCGGATGTGTCCAGGTGGAGGAGCATCATGCAGCTGATATTGACCTCTACCACTGTCCCAACTGTGAACCCATCCACGGACCCTCACACAtGAAGAAGAGGAATAACTGGCACAGGCATGATTACACAGAGCCGGATGATGGCACTCTGCCAGTTCAGGCTGGAACAGCCGTCTTCATTAAGGAGCTGCAGGAAAGAACTTTCCCCAGtgctgatgAGATCCTGGTGCAGATGCAGGGCAGTCAGGTGACTCAGCATTTCCTGGAAACAGAGGGCTTCCACTACCCCATAACAGTCGCAGACATGGAAGGACTGGGGCTCAAACTGCCCCCGCTGTCCTTCTCTGTCACAGACGTGGAGCAGTATGTGGgtGGGAATAAAGTCATCGATGTGATTGACGTAGCCAGACAGGCAGACAGTAAGATGAAGCTGAGTGAGTTTGTGAAGTATTATTATCAGCCAGAGCGGCCCAAGGTGCTGAACCTCATCAGCCTGGAGTTCTCAGATACTAAGATGGCAGAGCTGGTGGAGGTTCCAGATATCGCTCGTAAAATGTCCTGGGTGGAGAATTACTGGCCGGATGACTCTTTCTTCCCTAAACCATTTGTGCAGAAGTACTGCCTGATGGGGGTAAAGAACAGTTACACAGACTTCCACATCGACTTCGGAGGAACTTCAGTGTGGTACCACGTTCTCTGGGGGGAGAAGATTTTCTACTTGATCGAGCCAACTAAGGCTAACCTTGCACTATATGAGTCTTGGAGCTCGTCGCCCAATCAGAGCGAAGTGTTCTTCGGGGAGAAGGTGGAGAAGTGCTATAAGTGTGTGGTGAAACAGGGGACCACTGTACTTCTGCCTACAGGCTGGATCCATGCTGTGCTCACCTCTCAGGACTGCATGGCTTTCGGTGGGAACTTCTTACACAACCTGAACATAGGCATGCAGCTCAGgtgttatgaGATGGAGCGGAGGCTGAAGACTCCAGACCTTTTTAAATTTCCTTATTTCGAGGCCATCTCCTGGTACGTGGCCAAGAACCTGCTAGAGACACTGAAAGAGCTGCGGGAGGAGAAGTGCCAGCCTCAGGAGCATCTGGTGGATGGAGTGAAAGCTTTAATCTCTGCACTGAAGACCTGGCTCAGGAGAGAGTTAACAGGACCCAGCAGTGAGGTTCCAGATAACATCAAGCCCACCCTTCTCATCAAGGAGCTGACCAAGGAAATACGCCACCTAGAGGAGGACTCGAGTCCAGTAAAGACAGTGAAATCTCAGGGAATGTCCTCAGAGTGTTTGTCCACACGCTCCGCTCTGGAGAGACAGTGCCAGGTGCGACGGGCAGCTCGAAGGCTCCGGGAGCACCGCCATCATCACCgccatcgtcatcatcatcatcatcaccatcatcatcgaCACCGCCATCAGCAGCACGCCAAGCCCACCTCCAACCTGGACATCCTGGAGCTGCACACCCGGGAGGTTCTCCGCAGGCTGGAGGTCGGCCCTCTGGAAGAGGGTTCAGACTTCGGCTCCAAGACGAACGGCAAGTTCAGGAGGATCATCATGACGTCTGCTGTAACTGTGAAGAGGAGTCCTGATAACGCCCTGCGGCTGGTGATGTGTAATGGACGGATCATACGagagaggaggcggCTTGCCAGTGTAGCACTGAAGCATGAGCGAGACAAGACCTTGCCATGCCAGCAACACCAGGTCAAAGCAGAAAAAGCATTACCATGCCAACAAGATGGAGTGAAAAAGGAGAGCTCCTTGGAGGTGGAGTTAGAGACACTGTGCACTGTGAAAGCCACCAATCACAAACTCAGGACAGAGCTGCTGAGCTCAGGGTCGAACCTGCAGTCAGATAAAGTTGAGGCAGCCAATGCAGAGAAGCACTCTTCAGATTCAGGAAGCTCAGAGGATGaagagtgtgtgagacagaAGAGGAAAGGCTCAGGGAGCCAAACCAGCCAGTACCACAGATCACTAAAACGGGAACGGCCTACCTCACCCAGCCCGGAGAAGGCCCTGCAGGGCGTGCTGTCTGTGGCAGGCCTGATGTGCCAGCAGATGCCAGAGGAGGGCACAGTTTCTCAGGAGGCCTGGTGGTCCAACCAGACCAGCAGCAATGAGGCTGCCAGTCCGGACAGGGCAACAGGAAGTCCAGGAGAGGAATATTTATACCGGGAAAGCTCACTGTCACCCCCACTCCACCCCACCAAGAGACACGCCCACAACCCCAGCCCCATCAACAACCAGGCCACTAAAGGCAAGCGTCCCAAAAAGGGCATGGCAACAGCCAAGCAGAGGCTGGGGAAGCTCCTGAAGATGAGCAGACACACAAGCCTGCTCGTGTAGCATGACTGGGACCAgagcacacactcatacactgaCAAACACCCACACCACCTTTTCTCtctacctaacacacacacacacaaaacacatacaTGCAGCACTCTAAATGTGCATGTTTAGGTGACAAGGTATGTTTGAATGGCACTAGCATGCTGCTTCACAGCTCATATGGAGCGAATGACACGGAAAATGGAAAACGTCCTCAAAAACAGTGCAGGGAAATTTTAATCACGCATTTTGaaataggaaaaaaacataaaaaacataaataaaaatagcctaAAGTTTCTGGGTGGGTCTCCAAAGCTCAGAGGCTGAGGTATTGGTAATAGCACAGGCTGCTGTACTCTGTTGAGACCTGCAGGACTATGTGCAGTGGTATGGCCAAAGCTGTGTTTTCCAATTCAGCCAATCCTTCAGCTTCAAACCTCCTTTTATACTGAAATTTGTAGATTTGTCACAGTTCGGCTTGGCCAGAGTGTGATCTCCTCCCTCTCCTACCTCCATACTGTTGTGTAGCATAAGTGAAAATGGTGCTTTTTGGGCCGAGGATGGCTTTTTCGTATTTTTTCAAAGCCTGGTTCAGGGCGTATCttctttttttggtcttttttttatctctctgtctctctctctgtctctctctctttctgtccctgTCTCCTCATCGCTGACTACCTTCATCCTCTCTAGCTGTTGTCTGTGGCTGTGAATGATGAGCTTAAAAAGACTTGAGGGCCGGAATTtcctgtatttatgtttttaatggagAATCTTATTCTGATCTCCTTAATTCAGTTCAAAGCGAACTCTAATTCTGGTGGGAAAGCCGGCCTGGAGGTTTCTAAATGGTGCTGAACGTTTTGGAAGCTCTACACCACTATCCTTTCAAACCCTTGGAGCAATAATTGTACagtgttgattggttggtttgtttgttttattgattgattgattgattgattaacagATCTGTTGACAGATCTGTTGGTTATGTTATGTTCACAGGCAGCACCCCCACAGAGCTAGTCCTGTCTGATCCTATAGTTATTGTTATAGTAGTAGGTAGCTAACCATTAAGCACAATTTTTAAGGGGAAGTTCACTGATTTTTATGAATTTCTCTATAATTATGGGTTTTGATCAATTTGATATGAAATACACTGTTTATATAGATGATGATTAtggtaaaatactaaaaaaaatctgaccaaAATTGTTGGTTTCATTGGGGACTATTTTGGTGCGCAATGCCCTGAAACGTTATATGTATCCATCCACTCTTTCATTGATTTGTGATCTATTTTATAACTGTTCTATGCTTAAAATGTTACCAAATCTCTTGTTGGACTGCCGTGGTCACCGAAATGGATCCCCGTTCATGTTTTAATGTACTTTGTGTGATTGTGAGGGCACTGTAAACTACCACAATTCACTCATAATTAATTGTAAACACTATTAGTAAATAATTTGGATTTTGTGTGGGCTAgtaatgagggagtagggatCCAGTTTTATCTTTACTATACTCATTAActtattagtatttttaatttgtttgcaAATGAggaacacctttttttttttttttttaaatcttctcCAAAACTTCTGAAAAGCTCTGGATTTGCCCTTTACCGTAGCACTGGGGTTATCTGCTGCCACCCTGCGGACAGACAGGTAAACTGCAGTGGGTGGTGCTgccttgtatttttttctgctgtgtttAGACTGTAAGGAATTCAGTGAGAGCATAAGAGCTCAGGGAGAAATGACATCATTTCCTGCCtaatttgtgttattattttttccttcaagtgttttaaatgtaaatgttttctgtgttttttttttcttatttgttgGCTGTTAACTTATTAATTTCTAAGAGatgaaaaatgatgaaaatgatTTATGACATTCTGCTATAAGTGCTTCCTGCTATAAGGGTTGCTCttggatttatttgtttttccccgtttgcttgttttttgttgatgtaaataTGTGAAATTTCGAATGCGAGCGGGGACTTTATACGAGCAATGAAATTCACTGATCTTCACAGCGTTTTGTAGACGTCTACTTTCGCTCATTTGAAGCATAAGATTTGATGTACTCAAGGTTTTTGCTAAACTGTGCtgtaactaatgattattttaatttgggACGTCCTCAGTGCCTGTTCTCTGACTATTCCTCATCAAGAACAGCCAAAACTAATGAAAACAATCTGAATACAGGTGAAGCTGCAGGTGTTCTGGTTTGCTtgagtttgagtgtgttttggaTGAAAGATGATAGTGTGTTTCTCAGGGAACAAGCGACGTACCATCTTTAATTTCACCACCAGCATCATTCACACTCTCGTTATGAGCCAGGCTcgttaacttttatttataattctGTAAACGTATCTCCTGTCTgccatgtgtaacaatgtgatTCTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87943 lncRNA upstream 291915 19224014 ~ 19278071 (+) False LOC103045528
TU87953 lncRNA upstream 312403 19254361 ~ 19257583 (+) True G65150
TU87954 lncRNA upstream 314470 19253483 ~ 19255516 (+) False G65150
XR_002650195.1 lncRNA upstream 317537 19250226 ~ 19252449 (+) True LOC111192982
TU87942 lncRNA upstream 317571 19247531 ~ 19252415 (+) False G65145
TU87992 lncRNA downstream 2839 19600888 ~ 19601638 (+) True G65176
TU87999 lncRNA downstream 11416 19609465 ~ 19610521 (+) True G65182
TU88000 lncRNA downstream 12863 19610912 ~ 19611872 (+) True G65183
TU88156 lncRNA downstream 132428 19730477 ~ 19730879 (+) True G65301
TU88161 lncRNA downstream 145835 19743884 ~ 19747191 (+) True G65306
XM_022671462.1 mRNA upstream 170766 19368514 ~ 19399220 (+) True cd36
XM_022671459.1 mRNA upstream 264529 19286835 ~ 19305457 (+) True arhgdia
XM_022671460.1 mRNA upstream 264529 19287254 ~ 19305457 (+) False arhgdia
XM_007241718.3 mRNA upstream 285953 19280292 ~ 19284033 (+) False alyref
XM_022671461.1 mRNA upstream 290469 19277004 ~ 19279517 (+) True LOC103044219
XM_007232710.3 mRNA downstream 17561 19615610 ~ 19660520 (+) True kmt2e
XM_007232711.3 mRNA downstream 17561 19615610 ~ 19660520 (+) False kmt2e
XM_007232712.3 mRNA downstream 17562 19615611 ~ 19660520 (+) False kmt2e
XM_007232713.3 mRNA downstream 38617 19636666 ~ 19660520 (+) False kmt2e
XM_007232708.3 mRNA downstream 117739 19715788 ~ 19728171 (+) True orc5
TU87956 other upstream 229107 19280300 ~ 19340879 (+) True alyref
TU87957 other upstream 291171 19276802 ~ 19278815 (+) False LOC103044219
TU87714 other upstream 946487 18619860 ~ 18623499 (+) True G64990
TU87328 other upstream 1850558 17690209 ~ 17719428 (+) False G64698
TU86974 other upstream 2694045 16873087 ~ 16875941 (+) True G64449
XR_002650196.1 other downstream 182614 19780663 ~ 19794279 (+) False LOC103037311
TU88511 other downstream 1359086 20957135 ~ 20957635 (+) True G65565
TU88525 other downstream 1426126 21024175 ~ 21024574 (+) True G65575
TU88777 other downstream 2031813 21629862 ~ 21684834 (+) False gen1
TU89211 other downstream 3341553 22939602 ~ 22949192 (+) False ccdc167

Expression Profile