RNA id: XM_007234936.3


Basic Information

Item Value
RNA id XM_007234936.3
length 3923
RNA type mRNA
GC content 0.42
exon number 3
gene id alg10
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11990600 ~ 11997857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACGTCTGCTCCCGTGCTCAGGTTTCCGTCTGTCAGGTTGTAACCGTCGCTCCGCTCTCCGCTGGCTCGCTGCAGTATGCTGGCGGGTAAAAACATATTTCCCGCTAAAACTGGAGAGTTCATGGGGTTATGACTGAACGGGATTATTGGTAGACAACCCCGGGGAACGAATCTGCAATTTACATTAGGCTGTAGGACGGTTAATAGAGAGAAAAGCGATGTTAGAGCGGGCGGAGTGCTACGCCTTCACGGCGCTGTGCAGCGTCAACTTCTTCATATCGTGTTTAATCTTCTCTTCTGTGAGCCGAGAGCAGAGAGAGCCTTATATGGACGAGATCTTCCACATCCCACAGGCTCAGAAATACTGCCAGGGCAAGTTCAACCAGTGGGATCCCATGATCACTACACTGCCTGGCCTGTATCTGCTGTCTGTGGGAGTGATTAAACCAGTGGTATGGCTGGCAGACTTCTCTGGGGCGGTGGTGTGCTCCACTGCCATGCTGCGCTTTATCAACCTGCTGTTTAACTGTGGGAACCTCTACATCCTCTATCTCATCATCTGCAGGCTACACTTTAAGGACAAGTCCCGCTTGGCTGCTCGGAGAGTTCTCTCAGCCCTGACCCTGTCCACCTTCCCTGTGCTCTACTTCTTCACCTTCCTCTACTACACCGACGCCGGCTCCACCTTCTTCACCCTCTTCGCCTACCTCATGTGTCTCTACGGGTGTCACAAAGCCTCGGCCCTGCTGGGAATCTGCGCCATCCTTTTCCGACAGACCAACATCATCTGGGTTGCGTTCTGCGCCAGCACGGTGGTGGCTCAGAAGATGGACGAGGCGTGGCGGGTGGAGCAGTCAAAGAAGAGGGATGAGAAGACCCCCTCTCAGGTCCCACTGTCTGTCAGTGGCGTGAGGAGGGTAGTgaattttttgttgtattattttacgACACCGGCCAATGTGAAGACGGTGATCTTGGTGGCATGGCCGTATGGCTTAGTCGGTGCTGGTTTCGTTACGTTTGTGGTGCTGAATAATGGAATTGTGGTTGGGGACAGGACTAGTCACGAGGCTTGTCTGAACTTCCCtcagcttttttatttcttctcctTCACGCTGGTCTTCTCGCTTCCCGCCTCACTTTGCTACCACAGGCTGGTCAGGTTCGTACAGTCTCTGAGAAAGCACCCCTTCTTGTTTCTGCTGATGGCAGCTCTGTTCTTGCTGCTGATCTGGAAGTTCACTTACGTCCACAAGTACTTGCTGGCGGATAACAGGCATTTTCCTTTCTATGTCTGGAAGCGGATCTTCCAGAAGCACCATTTGATCCGGTTCCTCCTTGTTCCTGGCTATTTGTTTGCAGCCTGGAACTTTTACGACACTCTAAAGTTCAAGTCGCTGTTTTGGCTCTTAGCACTTTCTGTATGTTTACTGGCAGCTACAGTTCCTCAGAAACTGCTGGAATTCCGCTATTTCATCCTGCCGTATCTCCTCTACAGAGTACACATCCCTCTTCCATCTCTTCCTAGACTGCTGCTCGAATTTGCTCTCTACACAGCAGTCAACGCAGCCACGCTCTACATATTCATCTACAAGACATTTCACTGGCCTGATAGCTCTGCAGTGCAGAGATTCATGTGGTGAAATTTGAACACTGTAATCAGTtcacttcttttttctttttttttttgtactgaagatcaggaaaagaaaaaaaagaaatgactcccttttttttcctttttccccaCGGCTCTCACCAGGTACCAGGTACCTTCCTACTGCAGAATCATGTCAGCAGAAGAACATTCGAAAACCAAAAGCGACATTGAATATGTATTACAGCAGTTTTCTTTTGTTCTCAGTCTTTGTCCTGAAGTACCACATATATTAAACTGTGTTCAAACTGCAGGCAAATGTACTTTActtgattttatttcttaaatcagataaaaataAGTTGAGATTAGTGTTGCTCCGATTTCACTGATGCTCTACTTGTATTGGTACAGTTACTGGCACTGCACACACCATATCATTCTCATCAGTAAAGAGCACTGATACTATGAAGCCGTTactgacacacattttttttataactccGAAAGTTTTCGAATTTGCAGTTACTCAACCATTAAATGCTGTTCTTTCAAAATTGTATATCTTTTTTGAGATATAAAATACTACATGTACCCAAAATAAAACTATGGACTGTAAAatataatgctaaaaaaaaaactctgaagtAATTTAATCAGAGTTTGTATTGATATTGCTACTCAGTACTCAGTATTTACTACCCCCATTGATTGTCCACATGTTAATTGCAGTTGTTCAGATCAGATTTGCCTGTCTGAACATCACAAGTGTATCTGTACGAGTTTGACATCAGTAAGGCAGTGGTCACACACAAGGTAAATGCAGCCCAAATATGATCTTTTATGCCAAATGTGACACAGGTATTTCGTTTGGGTGGCTTGGTACTAAAATCCGGTGCATATCCGACTTTGAAGGCATAAAAATAGGCTACAAGTATAGTGGAAAATGGCTGTGAGTAAACGAGAAAATAATCAGTAATACTAGAATTAGACTCATGTCTCAGCCTTGTGGTGTTCTTAATAATTTGGCTGAACGTGGCTATAGATCATGACTGCAGGGTCCAAAAAAAACTTGTCCATGATAGAAAAATACGTAATTGTATTTAATAAGATTATTTCTCATGTAGTGAGGAACACAAAGGCATCCAGACTAAGACAAATCTTTCAAAACTTACAAATCAGTTTCAAATTACTTCCAAATGTAGCAAAAATGCAGTTTCTGGCTTTTCTGACTATCACAATCAATATAAATACAGTCTAGTTATGCCAAAACTCAGATTTGTGCCAGCAGTCTGAACAAAGCCAACATTTCTCTTTCTACTAAGTCACCTGATGCAGCTAATGAACTAATTAGGTCACCCTTCCTGAAGTGAATGGGCCTGTTAGATCAGGACTAGAGAACCCTCCAGAACTAGAACCGAGAACCACTGGATTATGGGATAATGTGTTCATTAATATCTATGTTTGAAAacacaagttttttttggcACTTACTTAACTACAGTACTGTTCAGAAAACAGCTGTTGCAGTTGTTAAAATTGTTCTGTTTGTGTTAAAATGCTGATCTCAGCAATAAATTTGTTTACACCtctaaaaatactgtatagcAGTATACATCTGCACTGGTTGGCTATTGAATTGTTGGCTGCCTTGATCCAGCTAATCACTATGGGCTGGTTTCCTAAACAGATTCAAAGTGCTGTATAGTCCAGGACTAGGTTTAATCATTAGCAATCACAGAAAACCAGCCCTATATTAAtttccaccagcagctcatttgaTTTACTTAAAGTAAGGACTGTTTAATTGATAACTAGGTGTTTGATGAGGACAGGGAATACTGAGCTTCTTCTAGTTCTCTTAATGTTTTAAGAAGCAGATAAGAAAAGGggtggatggatttttttgtctttaatattaaatgttctACACAGTTGAATTGTGTTGTCTTTTTCAAATGATTCCTTAAGTGTCCTCGTCTTTATTCACTGCCATTTGAGTCGCCTGTCGTGGACCAAGCACAAGCATcatctttttaatgtgattcgacaagttgtttgttttttcttcaagTTATACTGGTTCTGCCTTGTTTACCCTTAAGATGAATCGCCATAAATACTGATGCCAtttcttttaaactttaaacccTGTTAGATACAGATAAAACACGTCAGTCAGTTTAGTCTTAATTTCTTTACCTGAATGTTTTTCCTTTCACTCATATGAGTTCTCTTTGTATTTGTGAAGGTCCTTGTTCTCCATTGTCAGTGTTCATTTGCAAACCCACTGTTCTGATGCAATAAAGAAAGAATTTTAAATTTA

Function

GO: NA

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85449 lncRNA upstream 204 11986998 ~ 11990396 (+) True G63328
TU85415 lncRNA upstream 15047 11956885 ~ 11975553 (+) True G63303
TU85397 lncRNA upstream 179010 11811156 ~ 11811590 (+) True G63285
TU85380 lncRNA upstream 272058 11718022 ~ 11718542 (+) True G63269
TU85379 lncRNA upstream 288894 11701418 ~ 11701706 (+) True G63268
TU85450 lncRNA downstream 9428 12007285 ~ 12007519 (+) True G63329
TU85543 lncRNA downstream 379289 12377146 ~ 12378927 (+) True G63410
XR_002650191.1 lncRNA downstream 691462 12689319 ~ 12696748 (+) True LOC111192954
TU85623 lncRNA downstream 701191 12699048 ~ 12746828 (+) True G63460
TU85629 lncRNA downstream 810010 12807867 ~ 12811899 (+) True G63465
XM_022671343.1 mRNA upstream 3816 11980371 ~ 11986784 (+) True LOC103028484
XM_022671327.1 mRNA upstream 1525882 10440014 ~ 10464718 (+) True brd1
XM_022671347.1 mRNA downstream 363327 12361184 ~ 12373369 (+) True c7h12orf40
XM_022671348.1 mRNA downstream 363327 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671350.1 mRNA downstream 363327 12361184 ~ 12373369 (+) False c7h12orf40
XM_022671349.1 mRNA downstream 364616 12362473 ~ 12373369 (+) False c7h12orf40
XM_022671172.1 mRNA downstream 513031 12510888 ~ 12556587 (+) True LOC103032294
TU85065 other upstream 2340513 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 2550036 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 3450477 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 3457368 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 5134838 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 470193 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 661591 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 1158369 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 2746878 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 4424377 16422234 ~ 16426613 (+) False arid2

Expression Profile