RNA id: XM_007234938.3


Basic Information

Item Value
RNA id XM_007234938.3
length 1640
RNA type mRNA
GC content 0.45
exon number 11
gene id trmu
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 11970797 ~ 11978759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGGAGTTTCGAGCGGCACCGCAGACATGGCGCTGCCCTGTGAGGAGCATGATTGTGACAGCAGTGAGAAAAGCAGCGGATAAAAGATCAGGTTAACGGAATAAATCAGAGCGAAATCATGAGCGCAGTCAGACACGTGGTGTGTGCGATGTCTGGAGGGGTGGACAGCTCTGTGGCTGCTCTATTACTGAAGCGGAGAGgCTATCAGGTCACTGGAGTTTTTATGAAGAACTGGGATTCTCTGGATGAGAAAGGAGTGTGTACTTCAGAAAAAGACTGTGATGATGCGTATAAAGTGTGTCGGGCGCTGGATATACCCTTCCATCAGGTCTCCTATGTTAAAGAGTACTGGCATGAAGTGTTTAGTAATCTTCTCAGGGAATATCAGAGGGGCAGAACTCCAAATCCAGACATCATCTGCAACAAACTTATCAAATTCAAGCACTTCCATCAGTACGCAGTCAGTAATTTAGGTGCTGATGCCATGGCCACTGGTCACTATGCAAGAACATCTCTGGAGGACGATGAGGTTTTCATGCAGACACAAACACCAGCACCACGGACGCTCTTCAGAGATCGACTGGAGATCAGAAACCCTGTGAGGCTCTATCAAGGTGCTGATCTCTTAAAAGACCAAACATTCTTTCTTAGCCAAATTTCCCAGGATGCCTTGCGCCAGACCATCTTTCCATTAGCTGGGCTTACTAAAGATTTTGTAAAGAAGATTGCTGCTGAGGCAGGCTTCCATCATGtactaaaaaagaaagagAGCATGGGCATCTGCTTCATTGGTGAGCGAAACTTTGAAGATTTTATTCTTGAGTATTTAGAACCCAAACCTGGACATTTTGTCTCCATTGAAGATGGGAAGATAATGGGGACGCATAAAGGCTGGTTCACATTTACTTTAGGCCAGAGGGCACGGATAGGGGGGCAGAAAGACCCGTGGTTTGTGGTTGATAAAGACATCACAACTGGAGAAATATTTGTGGGTCCCACCACCAACCACCCAGCGCTGCTGCGGGACACCTTACAGACAGATCGCTTTCACTGGATAGCTGAGGAGCCTCCTGCTCAACTGGTCCAAACCCAAATGATGGACTGTCACTTTCGTTTCCTACACCAGATGCCTTTAACTCCATGCACAGTGACCTTGAACCTTGACGGAACATTGtggataacaataaaaatgccaCTGAGAGCAATTACAACTGGACAGTTTGCTGTTCTGTATAAGGGGGACGAGTGTCTCGGCAGTGGGAAGATTATCCGGCTGGGTCCGAGTGAATACACCCTCCAAAAGCGGAACCTTCAACTCAGCAGAACCAGCAAAGACCCTGAACAGCCTCCACAAACGTAGCAAAACCACCTGCAGAGACCTCAGAGACACCTCAACCCAACCTCAGCACAACACTATGTGGACTGTAACCACTGTAACCTGTGTTCACTGATAACACTGATTAATTGTACAACACAGATTCTGTGTTTCTGAGAGACATTTATATGATATCAGTGTATCATGAAGATCTTGACCCTTCAATTCTCCTTATGTATAatggtttttaattaaaataactgtttaacTTACATTTCTGTCAGAATATGTTCTGTAGTTTGTGCCATAAATATGTTTACTCTGA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0016783 sulfurtransferase activity molecular_function

KEGG:

id description
K21027 TRMU, SLM3; tRNA-5-taurinomethyluridine 2-sulfurtransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85441 lncRNA downstream 147720 11817096 ~ 11823077 (-) True G63320
TU85366 lncRNA downstream 335282 11632650 ~ 11635515 (-) False G63265
TU85505 lncRNA upstream 4537 11983296 ~ 11983560 (-) True G63384
TU85709 lncRNA upstream 341796 12320555 ~ 12380556 (-) False G63516
TU85712 lncRNA upstream 356860 12335619 ~ 12336210 (-) True G63519
TU85721 lncRNA upstream 386709 12365468 ~ 12379880 (-) False slc2a13
TU85720 lncRNA upstream 394430 12373189 ~ 12412582 (-) False slc2a13
XM_022671342.1 mRNA downstream 4990 11824846 ~ 11965807 (-) False LOC103026753
XM_022671341.1 mRNA downstream 4990 11824846 ~ 11965807 (-) False LOC103026753
XM_022671340.1 mRNA downstream 4990 11824846 ~ 11965807 (-) False LOC103026753
XM_022671339.1 mRNA downstream 4990 11824846 ~ 11965807 (-) False LOC103026753
XM_022671337.1 mRNA downstream 4990 11824846 ~ 11965807 (-) False LOC103026753
XM_015601784.2 mRNA upstream 8155 11986914 ~ 11990505 (-) True tprkb
XM_022671344.1 mRNA upstream 50555 12029314 ~ 12246559 (-) False LOC103023221
XM_022671345.1 mRNA upstream 50555 12029314 ~ 12246559 (-) True LOC103023221
XM_007234949.2 mRNA upstream 276546 12255305 ~ 12320325 (-) True LOC103029962
XM_007234940.3 mRNA upstream 351274 12330033 ~ 12359741 (-) True LOC103029428
TU85294 other downstream 1559566 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 2348009 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 3796995 8166678 ~ 8173802 (-) False LOC111192870
TU84254 other downstream 5232849 6735163 ~ 6737948 (-) True G62484
XR_002650150.1 other downstream 5247267 6722102 ~ 6723530 (-) True LOC111192868
TU85708 other upstream 341796 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 2806562 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 3015405 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 4606306 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 4903576 16882335 ~ 16887903 (-) False G64492

Expression Profile