RNA id: XM_007234959.3


Basic Information

Item Value
RNA id XM_007234959.3
length 3817
RNA type mRNA
GC content 0.47
exon number 5
gene id st8sia1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13271177 ~ 13303112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTGTAGGTTATTTAGCACAGTTAGGCGGTGGATGCTGCCTGCCGGCCGGGGCTGAGGCTGGGTCGGGTGTGTAGCTAGCTAGCGGACCCCCGCGTGGAGAGGGGGCTGCTGGGGCTCTATAGTCAGCAGCACGCAGCAGAGGCGCGGAGgaacagaaacactggatactaCTGCCTAGATTCACTGGACTAGACCCCCTGGACCTCCGGTCTCGCTAGCTTGTGCTGACTGCAGGGTCCTCCTGCAGGAAGAGGGCTCCTGCGTGcatcatatatataaatataaatacatgcccaatggtggaggaggagaggaaccTACTGAATGAGCAGGAGCTGCAGTCCAGTGCAGGAGAGACGTGACTACTACACAAGGCTGGCACCATGATGATGTCTCTGAAATGCCACAGAAGCAAGTCTGTGTGGGCCGCACTGGGAGTGCTGGTGCTCTGCTGGCTCTACATCTTCCCAGCCTACAGGATGCCCAGTGATAAGGAGATAGTGGAGGAGGTGCTGAGGCAGGGCCAGACCTGGAGCAAAAACCAGACTGGCATTGATCTGTACAGgAAGTTGCTCACAGAATGCTGTGACCCAAAGAAGATGTTTGCAGTCACCAAAGAAAACTCACCCATCGGCAAGACCCTGTGGTATGACGGCGAGTTCTACCACTACCACACGGTCAGCAATGAGACCTATCCGTTCTTCGTACAGGATACTCCGCTGCAGCTGCCACTGAAGAAGTGCTCGGTGGTGGGGAACGGTGGCGTTCTGAAGAACAGCGGCTGTGGCAAAGACATTGACCAGGCTGACTTCGTCATGAGATGTAACCTGCCTCCACTGTCCAAAAAGTACACTGATGATGTGGGAACGAGGACACAGCTGGTGACGGCCAATCCCAGTATAATAGAGAAGAGCTTTCAGAATCTCCTGTGGTCTCGGAAAGCCTTCGTGGAGAGCATGAAGGCCTACGGCTCCAGCTACATCTACATGCCTGCCTTCTCCATGAAGCCGGGGACGGAACCCTCGCTCAGGGCCTACCACACGCTGGCAGACACCGCCTCCAACCAGACGGTGCTGTTCGCCAACCCGGACTTCCTGAAGAACGTGGGACGCTTCTGGAAGAGCCGCGGCGTGCACGGCAAGCGCCTGTCCACAGGGCTGTTCCTGGTGAGCCTGGCACTCGGCCTGTGCGAGGAGGTCACGGCCTACGGATTCTGGCCCTTCTCTGTGGGGCTGGACGAGCGGCCGGTCAGCCACCACTACTACGACAACATCCTGCCGTCGTCGGGGTTCCACGCCATGCCCGAGGAGTTCCTGCAGCTGTGGCACCTCCACAAGAGTGGCACGCTGCGCCTGCGCGTCGGCAGCTGCGTGCCAGGCAAGGACCAGCAGAAgtaggaggagaaggaggaggaggtggatgaAGAGGAGCAATGGTTGCTATGGGCAACTGCTTTGGATTGTCTTGTGTTTTGTGTTAGAGGCTCCACCCCCCCCCACGAACCACGACCACCACCAACAACACCACCCTCACCTATTCTTCGGATTAGCATGAGAATAAAGAGTGAGAATAAAGCCTCTTGGAGCTGATGCCAGCCCTCTGCTTGATCACAATAGGGGAAAACGGATGATGAGGACTCAATACCTCATCctaacacactcacatacacacacacacacacacacacatacacacacacacactcagatagCTAGACACATTTCCCTTTGCTGTTGCCAAGAAACTGTCATTCAGGCCTGCCTGGACGTTCAGTCCACACTCGGTCGCCACCACCGCACAGCATTCAAGCTGGAGGTATGGTAGGGGGTCTTTGGAATGCGGGGGCTGGCTAAGAGCTGCCCGCTTGCTGTTTAAAAGCTATAGCTGCATTTTGCTTcgggtttttttttacagcagctgGGCTCCCGGACCCCCGGGggctttttcttttgttgttcaaAAGCCTGAACAAGAGGACGGGGCGTGCGGGGGCGGGTACTTAAAGACGTCTCAGATGGACTCAGTATGAGGAGCAGAAGCGAGGAAAGCAGGCTTCATGCCAAGGCAACAAGAGtcgggggcgggggggggggggggtcagggCTAAAAATGGAccagagaaaaaaggagaaacaaACTAGAAACACTGCAGTGTGTAAACCTGTACACGgttctgctttcttttttcatgatgacttactttaaaataagaaaaaaggaagaaaccaTAATCTTGAAGAGGAGAAGACTGACTTGAATATGTGTCGATGTGTCGATTACAGTGGAATTCCAtcaatttatttcaaaatttctaaataattttgTCGCTAAGATGTAAAATGATGCAATAATTGTAGACACTTGCTAACTTTTACTTAATTCTTTACAGTGGTGCTAATGGTAAGATATGgcaatttcatttaatttccaatttaatttaaaccaaCAGTGAACCTTTTATGTCTTCAGAGTTGTTTATATCAGAGAGTGTCTCTAATGATTTGGAGGCTATTTGGTCTTTGAGATAAGTGTGCGAGGTCTCCTACATCAAGACTCTCTTACCACTTCGCATGGACAtctctagccagacaccaccagtcacgatcattaccaaaCACTGCTCTACTGTTCactaaagtaactttttttgaGGGAGATTTTAAAGCATATGAGCATTATCCCATTACAGGTGGGTTGCTCTGGTTTGAATCAGTTAATGAGATAAGTAAGCTTAGAATTTCCTcctgttttggtttgttttcacacagagaAAAAGCCAATCGCaacaaaatgcatcacaacaaaCCACCTGAGATCATTCTCTCTGCTAATTAGTCAGACCTGCGAGCAGTAAACATTTACATGTACATTAacagcatttagctgacacttttatccaaagtgacttacaaggtaATTCCTATTACAGCAGTGGACCAATGCAGTGTTAGAAATCTTGCCCAAGGACGCTTATTGGTTTAGCGCAGCATATCTGTTACCTAGACGAGgcattgaaccccagtctcccacatgatgtgttAGCTCACCTCCTCTCAAAGATCAATTTGGTGTTTTGCTTCACACCTAAATGCATATCGTCGGATTAGAGCttagatgttaattaacattgcaacaatGAAGaagcatatacctataattTAAGAGCAATGTtaattaagaacagctacacacagcgctgcaagtcaaatgCTTAGTGGAtgagctgcgtgattataacattctaagtGCAACTTTTATTCAAATAACAGTTTGTTTTGTTGCTTAGCTATATTGtatcacgccatagctttatataaaataaaaatagcattaaaaaacagacacctacatcacagactattttcttgggcagagaatctaagctctaaaccGGATTAAAAAGTGCAAATGGGAAAATTCTTAATCTACTCACAACCATCATCAATATAAACAACTGTACACCCgagcatttcacaccaaaccagtTAGAATGACATTGTTCACATCTTAACTATTTAATTCTGTAGAATTTTTCAGAAATTTGCTAAATTGATGGAATTCCCCTATAAAACAGAACCAAAATGGAAACGCAGACATTTGACATGAAGTGAAATGAATGTACTGTAAATGCAATGCTGTTTGAACCGCGATTTCGAACATTCTTTCATCACACGTCATTAATTTTTAGATATCAGTATAGTAGGTACCTATATTGcgtatttgttttttgtgaacTGCTCCAGAGAGCACTTCTTCTATTcatgttggtgttttttttattagaatttgatcattttttttattttatttatatt

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function

KEGG:

id description
K03371 SIAT8A; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8A)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85665 lncRNA upstream 72342 13173393 ~ 13198835 (+) True G63493
TU85662 lncRNA upstream 77409 13170802 ~ 13193768 (+) True G63490
XR_002650154.1 lncRNA upstream 98750 13171696 ~ 13172427 (+) True LOC111192873
TU85657 lncRNA upstream 108079 13158325 ~ 13163098 (+) True G63488
TU85656 lncRNA upstream 108815 13158325 ~ 13162362 (+) False G63488
TU85697 lncRNA downstream 3649 13306761 ~ 13311171 (+) False G63510
TU85700 lncRNA downstream 3649 13306761 ~ 13311171 (+) True G63510
TU85698 lncRNA downstream 3950 13307062 ~ 13311171 (+) False G63510
TU85704 lncRNA downstream 22188 13325300 ~ 13325508 (+) True G63514
TU85950 lncRNA downstream 94520 13397632 ~ 13401310 (+) True G63709
XM_022671364.1 mRNA upstream 28435 13210222 ~ 13242742 (+) True LOC103034836
XM_022671363.1 mRNA upstream 109810 13156245 ~ 13161367 (+) True LOC111192955
XM_022671362.1 mRNA upstream 467606 12767838 ~ 12803571 (+) True LOC103034184
XM_022671360.1 mRNA upstream 527566 12701140 ~ 12743611 (+) False LOC103025111
XM_007234962.3 mRNA downstream 66568 13369680 ~ 13381915 (+) True LOC103036201
XM_022671368.1 mRNA downstream 83426 13386538 ~ 13395569 (+) False LOC103026035
XM_022671367.1 mRNA downstream 83428 13386540 ~ 13396263 (+) True LOC103026035
XM_007234964.3 mRNA downstream 130457 13433569 ~ 13445672 (+) True usp44
XM_007234965.3 mRNA downstream 204266 13507378 ~ 13539050 (+) True fgd6
TU85654 other upstream 109857 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 611659 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 802275 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3621090 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 3830613 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 1441623 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 3119122 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 3136108 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3449931 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3530184 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile