RNA id: XM_007234969.2


Basic Information

Item Value
RNA id XM_007234969.2
length 3229
RNA type mRNA
GC content 0.48
exon number 5
gene id tmcc3
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13591612 ~ 13633235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAAAAGAAGGATTGGCTCACGAGACGCGGCTTCGTCGCTTGAGGAACAGGGCGCGAGGAGACGGAAGAACGGAGGGCGGACAGCGGCGGCTGGTTTACCGGGACAGCGGCGATGCCCTGCGCCACAGCGCCGGACAAAACTTTCCCCGAAGTGGCCCGGAGTTCGTGCGGAGAAACGGCGGCTGACGGAAGCGGTCTGGCTGTCCCTGGCACCATGCAGTGGGGCGGCTCTGAGACGTGCCTGGAGCTGGATGGCGAGGGGTCTGTTCAGGGCGGGAGCCGGGGGCGCCTGGGGCTGGATGGGCTGCAGCAGAAGGTCCTGAAGGTGACGGAGCAGCTGCGGATCGAGCAGGCCCTAAGGGACGAGAACGTGGCCGAGTACCTGAAGCTGATCAATAGTGCCGACAAGCAGCAGAGCGGACGCATCAAACAGGTCTTCGAGAAGAAGAACCAGAAATCCGCTCAGTCCATCGCCCAGCTGCAGCGCAAACTCGAGCAGTACCACCGCAAGATGAAGgagtgtgatgtcacttcctccaCTAATGGGtccaaacactcacactccCACAGCAAAGACGCGAAGGAAGCTTCCAAGGACAGTTTAAAAGAGTGCAAGGAAGCAGTGGCCAAGGGCAGCGGACGACACCCACAGCTAGACAagGTAAAGACCATCGGCCCGGGTGTGTCTCTTTCACCGCCTTTCTTCTTCAATAAGTCCCGCGGCTTCGCCAGTCTCATCCGCAACAAGTTCGGTAGTGCCGACAACATCGCCCACCTAAAAAGCTCCATGGAGACCGGTGGCGGGCTCCAGACAGAGGGGGCGGGGCGAGCGCTGAGCGGCAGCGCCACACTGACCAGTAAACCTAAATACCCGAGTGACGACGAGTGTTCTACAGGAACGTCTGTGTCTGTGGAAAGCAACGGGCACACGTCAGCCCTGGGGGCTGTGCAGAGTGAGGCAGGACCGGGGGAGGGCTTCAGTAGGCTGGCGGACGCTCTGGAGGAGGTGCGTGAGGTAAAGGAGGCACAGGCTCACCTGGCTGAGGACATTGAGAGTCTGAGGAGTCAGATGAAGCGTAACTACGGATTTATCACCCAGATGCTGCAGGAGGAAAAATACAGGTGCGAGCGGCTGGAGGATCAGCTGAATGACCTGACCGAGCTGCATCAGAATGAGACGGCCAACCTGAAACAGGAGCTGGCCAGCATTGAGGAGAAAGTAGCCTACCAGGCTTACGAACGGGCCCGAGACatgcagGAGGCGCTAGAGGTGTGTCAGACGCGGATCAGTAAGCTGgagttgcagcagcagcagcagcagttggtGCAGCTGGAGAGCGCCGATGCCAAAGTGCTGCTGGGAAAGTGCATCAACATCATGCTGGCTATTGCCACGGTCATCCTGGTGTGCGTCTCCACCGCCGCCAAGTTCACGGCGCCGCTGTTGCGGAGCCGCCTGCACATTCTCGGGAcctttgtgtgcgtgtgtgtgcttgCGCTGGGCTGGAGCCACTGGGAACATGTACAGTGTGCAGCAGAGAGGATGTTCCTGCCCAGATGAGGGACAAGACAAGTGTGtatggtgtatgtgtgtgttcgtaTTATAAATGTACACTGGAAAGGAAGGGAAATACACTGAATTTACTTCATACAAATGTGAACAGCAGAAAGATTTGATTGATGATATAGGATGCATAACTAGTAGACAAGATTCTGGTCCCATTGTTCCCGGTTTTGACCTCAAAGTTCGGTACAGAGGTTTAGCACTGTGGGATAAAAGTTGCATACTCTTCTAGCTTTTTATGTTACAGTTTAATTTTTTCTGCCCATAATCTTATAATATATCCTACcctaaacagtattttattaatatgaaagtaattactttacaataaggctcacaaataacagtacctACAAAAGTAATAAACCTCGTTAAACAGTTAAAGCTGATATCCGTAAGTTTTGAGATTTAGAGCCCTCTCTGAGAATGGGTCTTTTGCACCAAGCAATTGTTTCACGCCttcgtttctttgattttactacgAGTGATTAAGCTACTGAGCTCTatgtttccccttctgaagtctccattgctccaccagccactcgctttcagtaaaactgagccttatcctcttttagaggctttACATGTGAGGTAGGTACATAATGGCGCGACGTGGCCAAAAGAACTTCCGTGAAAAGCagcccgacaccccagtttttagaatgaatatattaggcttagcagggatggtcgttccagcacactggtaacAATAAACACACCCAGAAAtgtttctgctttcagtttacaaacaaaataatacggactgcctcTTTACGTAATGTCTCAGCTAATTATTAGTTCACTctaattaatacattataaaacattGCAAAATGTTAATGCCTGAggatgttgtaaataataatgaattgagaaaATGGTTAGAAGtgttgtaatgattaataatgtcctaactaacattaataattaataagttgagacattctgttgtaagtactgttcatgaatgtacccttattgtaaagtgttactgaagTAATGAATCCATTTGTAGGAAGTAAATTCAGTGCTGCTCTCCCAAACTGTCCTGGACTCATCACTACAGCCGGGCATTCGCAACAATGGACAGTTTCCTGAACAATggctttaaaaaggcttttatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgactgcgaTGCTCGGAACATAATGACTTTACTACTGACACTGGAATTCCCGATTGTGAACATTGGAGTCATCACTACTGTTGGACGTTTGCGGCAATGAACTGTTCTGTTCTCTGAATTATGGCTTTAAAGGAAattgtttgtgtgcgtgtgtgtgtgcgtgttctGCTTCTCTACTCCAGCAGTAACGGGTCCGTTTCtgttaatgtactgtattaGTTGTTTTGTTCACCTGATCTACTATACTGGATTACTAGGGGTGCACCAGATTGACAAGGAAAATGTAATTCCTATTGGTCATAGGTCATGATACTAGTTTCCATCCCATGACTTCTGCCActttttgtcactttttgtatttatataaccATTTACTACAGTTGTTGGATCTGATTTAGCTGTGTCACAATTACATGGAGTCAATcattgatatacagctctggaaaaaatggagaccacttaaaaataatgagttttttttattttaccaaattataaatc

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86005 lncRNA upstream 49605 13542613 ~ 13543511 (+) True G63755
TU86006 lncRNA upstream 51115 13541161 ~ 13542001 (+) True G63756
TU85987 lncRNA upstream 83519 13451746 ~ 13509597 (+) True G63738
TU86106 lncRNA downstream 78674 13711909 ~ 13713440 (+) True G63813
TU86129 lncRNA downstream 121630 13754865 ~ 13755370 (+) True G63827
TU86260 lncRNA downstream 533994 14167229 ~ 14242233 (+) False gata3
TU86326 lncRNA downstream 749647 14382882 ~ 14383150 (+) True G63978
TU86327 lncRNA downstream 799736 14432971 ~ 14433787 (+) True G63979
XM_007243321.3 mRNA upstream 28016 13561436 ~ 13565100 (+) True ndufa12
XM_022671371.1 mRNA upstream 35526 13544952 ~ 13557590 (+) False LOC103030426
XM_022671373.1 mRNA upstream 35526 13546939 ~ 13557590 (+) True LOC103030426
XM_022671372.1 mRNA upstream 35526 13546940 ~ 13557590 (+) False LOC103030426
XM_007234965.3 mRNA upstream 54066 13507378 ~ 13539050 (+) True fgd6
XM_007234978.3 mRNA downstream 125093 13758328 ~ 13773588 (+) False rbm17
XM_007234977.3 mRNA downstream 125095 13758330 ~ 13773588 (+) True rbm17
XM_007234973.3 mRNA downstream 153011 13786246 ~ 13806954 (+) True pfkfb3
XM_007234972.3 mRNA downstream 153011 13786246 ~ 13806954 (+) False pfkfb3
XM_007234976.3 mRNA downstream 153011 13786246 ~ 13806954 (+) False pfkfb3
TU85654 other upstream 431796 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 933598 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1124214 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 3943029 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4152552 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 1111500 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2788999 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2805985 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 3119808 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3200061 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile