RNA id: XM_007234974.3


Basic Information

Item Value
RNA id XM_007234974.3
length 2171
RNA type mRNA
GC content 0.52
exon number 16
gene id pfkfb3
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13786246 ~ 13806954 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATGTGGGACACCGGCACCGGCCAGATCGAGAGCAGCAGCGCagatacagcagtttaaccggGTTTAAGGTCTTTACCGGAGACATTTACAGATACAAGTTCGTGGTAAGGCTTTGTTTCGACACCATCACCGAGGAATGACGAGGGAACTCACCCAGAACAAAATCCAAAAGATCTGGATCCCTTCCAAAGATGAGAATAAAGCAGCTGCACCACGGAAAGcgaGTGGTGGCCCACATTTGGCCAACCCTCCTACAGTCATAGTGATGGTCGGCCTTCCTGCAAGAGGCAAAACCTACATATCAAGGAAACTCACACGCTACCTCAACTGGGTTGGCATGCCCACCAAAGTCTTCAATGTTGGCGAGTATCGCAGAGAGGCAGTTAAACACTACAGCTCGTACGATTTCTTCAAATCTGACAATAAGGAAGCAGTCAGAATCAGAGAACAATGTGCCTTAGCTGCTCTGCGAGATGTCAAAATTTACCTCACTGAGCTGGGAGGACAAGTCGCAGTCTTTGATGCCACAAACACGACTAGAGACAGACGAGAGTTGATCCTGGACTTTGGCTCTGAGAACGGCTTTAAGATCTTCTTCATCGAGTCCATCTGCGAGGACCCGAGCGTCATCGCTGCCAACATCATGGAAGTGAAGGTGTCATGTCCGGACTACCAAGACTGTAACAAGACGGATGCCATGGAGGATTTCCATAAGAGAATTGAGTGCTACAGAGTGAACTATCAGCCGCTTGACCCGGACAGTTACGACAGGAACATGTCCTTCATCAAGGTGATTGACGTGGGCCGCAGGTTCCTGGTGAACCGTATTCAGGACCACATCCAGAGCCGAATCGTCTACTACCTGATGAACATCCACGTCCAGCCGCGCTCCATCTACCTGTGCCGCCACGGGGAGAGCCAGCACAACCTGCAGGGCCGACTGGGCGGAGACTCAGGACTGTCCACAAGAGGCAGGAAGtTCTCCAGCGCTCTGGCCAAGTTTGTGGAGGAGCAGAACCTCAAAGACCTGAAGGTTTGGACGAGTCAGCTGAGACGGAGCATCCAGACGGCCGAGGCCCTGAACGTTCCATACGAGCAGTGGAAAGCACTCAACGAGATCGATGCAGGCGTGTGTGAGGAGATGACGTATGAGGAGATGAGGGAGCGTTACCCTGAAGAATTTTCTCTGAGAGATCAGGACAAATACTACTATCGCTACCCTACTGGAGAGTCATACCAGGACCTTGTTCAGCGGGTGGAGCCTGTGATCATGGAGCTGGAGAGACAGGAGAACGTTCTGGTCATCTGCCACCAAGCTGTCATGCGCTGCCTCCTGGCCTACTTCCTGGACAAGAGTGCAGATGAGATGCCCTACCTCAAGTGTCCGCTCCACACCGTGCTGAAGCTGACCCCAGTGGCCTACGGGTGCAAGGTGGAGTCCATCTCGCTGAACGTTGAGGCGGTGAACACACACCGGGACAGACCTGAGGAGATTAAGAGAGGTCCAGGAACGCTGATCAGGAGGAACAGTGTGACCCCTCTGACGAGTCACGAGCCCACCAAGAAACCTCGTATCGACGCCCTGGATGACCCGACCATCCCTGAGCTCACCCCAGCACCACTCACCTTCTGTGCCACCACCAACAGCTCTATCGCTCTGACCACACAGCACGGGCTTGGTCAGGCTTGCCTCTCCATTACAAAACTTAAGAAGCAGCAGAACCTCAGACACCAGAAACATCTCATCTGATCTGCATCAACTGCATGTGGGGCAAGAGGCAAATTGTGGAAAGTAAAttttcacacactttcactTTATCATGACTCCAGGCAGCTAAAAACTGCTGTGTAATTTAAGGATTGTGGTTGCACTCGATTAACTTCACCTTCCCACACACTGTTGCATCACTCGCTTAACCAGCATGCCTGGCATACTCGCTTACCCGCATCACCAGTGACAGATAGCACGTTACGTAAGCTTGCAgcatgagtgagtgtgtgtgtgtgtgtgggcattgCCAGCTGACTCGGCTCATTGGCATGGCTATATTTCTTGGCTGTCTTTGTCTTCTAATgcttttcatttgttttgtcCTCTAACACTTATCTTgtctgctgtgtgtgtctgtgtgtgtgtgtttgtgtgtgtgtgtttgtgtctgtgtgtgt

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0006000 fructose metabolic process biological_process
GO:0006003 fructose 2,6-bisphosphate metabolic process biological_process
GO:0003873 6-phosphofructo-2-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86129 lncRNA upstream 30876 13754865 ~ 13755370 (+) True G63827
TU86106 lncRNA upstream 72806 13711909 ~ 13713440 (+) True G63813
TU86075 lncRNA upstream 108987 13573720 ~ 13677259 (+) True G63791
TU86005 lncRNA upstream 242735 13542613 ~ 13543511 (+) True G63755
TU86006 lncRNA upstream 244245 13541161 ~ 13542001 (+) True G63756
TU86260 lncRNA downstream 365243 14167229 ~ 14242233 (+) False gata3
TU86326 lncRNA downstream 580896 14382882 ~ 14383150 (+) True G63978
TU86327 lncRNA downstream 630985 14432971 ~ 14433787 (+) True G63979
TU86340 lncRNA downstream 672040 14474026 ~ 14474399 (+) True G63992
TU86352 lncRNA downstream 866130 14668116 ~ 14731918 (+) True G64001
XM_007234978.3 mRNA upstream 12658 13758328 ~ 13773588 (+) False rbm17
XM_007234977.3 mRNA upstream 12658 13758330 ~ 13773588 (+) True rbm17
XM_007234970.3 mRNA upstream 153011 13591612 ~ 13633235 (+) True tmcc3
XM_022671386.1 mRNA downstream 213130 14015116 ~ 14042802 (+) True itih5
XM_007234981.3 mRNA downstream 254799 14056785 ~ 14081113 (+) True itih2
XM_022671388.1 mRNA downstream 288346 14090332 ~ 14098546 (+) True atp5c1
XM_022671387.1 mRNA downstream 288346 14090332 ~ 14097482 (+) False atp5c1
XM_007234984.3 mRNA downstream 288346 14090332 ~ 14096315 (+) False atp5c1
TU85654 other upstream 624926 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 1126728 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1317344 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 4136159 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4345682 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 942749 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2620248 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2637234 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 2951057 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3031310 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile