RNA id: XM_007234978.3


Basic Information

Item Value
RNA id XM_007234978.3
length 1677
RNA type mRNA
GC content 0.49
exon number 13
gene id rbm17
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 13758328 ~ 13773588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCACACTAGAGGGCAGCACTTCGTTTGGCCACTTTTGATGACGTCATTAGAAGCGACGAGGAGACGGCGCGTTAGCATGCTGTGCTAAATGTGGTGGAATATTGAGGTTTCTCGCTCCCGTTTGGAATTTAATCACAGGTGAACCAATGTCTCTTTACGATGATTTGGGGGTCGCTACCAGTGACGCCAAGACTGAAGGATGGTCGAAGAACTTCAAACTGCTTCAGTCGCagctgaaagtgaaaaaagctGCTCTGACACAAGCAAAgACGCAGAGGATGAGACAATCCACTGTTTTGGCTCCAGTTGTTGATCTCAAGAGAGGAAGTGACGAGCGGCAGATTCCAGACACACCCCCACATGTAGCAGCAGGGCTGAAGGACGTACCAGGTGGCTTTTCTGCAGGTGATGTCCTAATCCCGCTCCCGGATGAGTATGATCCCATGTTCCCAAATGACTATGAGAAAGTGGTGAAAAGACACAGGGAGGAACGTCAGAGGCAGAGGGAACAGGAGCGGCAGAAGGAGatcgaagagagagagaaGAAGCGAAAGGAGCGTCATGAAGGATCGGCCCCCAGTGGTTTCTCACGTTTCCCCACAGAGGCAGATTCAGATGAGGATGAGGAGTatgagaaagagaagaggaagaggaGTATGGGTGGTGCTGCTATTGCCCCTCCAACGTCTTTAGTGGAAAGGGACACATCCTACTCATATGATGAGGAGGGTCGTCAGAGATCTAAAGCAGCAATCCCGCCCCCTGTTTATGACGACTCAGAGAGACCCCGCTCTCCGCCAGGACCCACCAGCTCCTTCCTGGCTAACATGGGgGGGACGGTGGCTCATAAGATCATGCAGAAGTATGGGTTCCGTGAGGGTCAGGGTCTGGGAAAGCATGAGCAGGGTTTGAGCACGGCTCTGTCGGTGGAGAAGACCAGCAAACGTGGCGGGAAAATCATCATCGGAGACTCAACGGAAAAGAATTCAGGATCCAGTCAGAGTGCGGCTGACACACCTGGGTCTAATTCGGGAGCATCAGACCCGTCAAAGAAGAACGAGGTCAACCCACTGACAGAAATCCTCAAATGTCCTACGAAGGTGGTTCTATTGCGGAATATGGTGGGAAGAGGAGAGGTGGATGAAGATCTGGAGGCGGAGACCAAAGAGGAGTGTGAGAAATACGGCAAGGTGGTGAAATGTGTTATATTTGAGaTCTCGGATGTGACGGATGATGAAGCAGTGAGGATATTCTTGGAGTTTGAACGTGTTGAGTCAGCAATTAAAGCTGTGGTGGATCTGAACGGAAGGTATTTTGGAGGTCGAGTGGTGAAGGCCTGCTTCTACAACCTGGACAAATTCCGTGTGCTGGACCTGGGGGAGCAGGTGTAGTCACCTGACCAGCGTCCCGTCTCTCACTTTAGTTACGTCAGTGAAAACAGTGAAAGTCCGTTTCCTCCTCCGCTCTGTATATAGCATCAATAGTTTTTATATGCCCTGATCACAGTGTCTGCTGTCGAACTGTCaaattgattttttgtttttgataatTTGTTGATTTGATTTCCTTTATCAGTTAAATGTGTACTGAACATCTCTTCCTGTGTCTCTTTGGAAAAGAAACATTAGCATGTTGTACAAAAACCTGGAAATAAACTGTGTATTTTGGAAATCTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86129 lncRNA upstream 2958 13754865 ~ 13755370 (+) True G63827
TU86106 lncRNA upstream 44888 13711909 ~ 13713440 (+) True G63813
TU86075 lncRNA upstream 81069 13573720 ~ 13677259 (+) True G63791
TU86005 lncRNA upstream 214817 13542613 ~ 13543511 (+) True G63755
TU86006 lncRNA upstream 216327 13541161 ~ 13542001 (+) True G63756
TU86260 lncRNA downstream 393641 14167229 ~ 14242233 (+) False gata3
TU86326 lncRNA downstream 609294 14382882 ~ 14383150 (+) True G63978
TU86327 lncRNA downstream 659383 14432971 ~ 14433787 (+) True G63979
TU86340 lncRNA downstream 700438 14474026 ~ 14474399 (+) True G63992
TU86352 lncRNA downstream 894528 14668116 ~ 14731918 (+) True G64001
XM_007234970.3 mRNA upstream 125093 13591612 ~ 13633235 (+) True tmcc3
XM_007234969.2 mRNA upstream 125093 13593116 ~ 13633235 (+) False tmcc3
XM_015601793.2 mRNA upstream 125093 13593856 ~ 13633235 (+) False tmcc3
XM_007243321.3 mRNA upstream 193228 13561436 ~ 13565100 (+) True ndufa12
XM_022671371.1 mRNA upstream 200738 13544952 ~ 13557590 (+) False LOC103030426
XM_007234973.3 mRNA downstream 12658 13786246 ~ 13806954 (+) True pfkfb3
XM_007234972.3 mRNA downstream 12658 13786246 ~ 13806954 (+) False pfkfb3
XM_007234976.3 mRNA downstream 12658 13786246 ~ 13806954 (+) False pfkfb3
XM_007234974.3 mRNA downstream 12658 13786246 ~ 13801986 (+) False pfkfb3
XM_022671386.1 mRNA downstream 241528 14015116 ~ 14042802 (+) True itih5
TU85654 other upstream 597008 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 1098810 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85565 other upstream 1289426 12468050 ~ 12468902 (+) True G63432
TU85065 other upstream 4108241 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 4317764 9433437 ~ 9440564 (+) False LOC111192948
TU86374 other downstream 971147 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 2648646 16422234 ~ 16426613 (+) False arid2
TU86763 other downstream 2665632 16439220 ~ 16442449 (+) True G64289
TU86945 other downstream 2979455 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 3059708 16833296 ~ 16864454 (+) False LOC103030423

Expression Profile