RNA id: XM_022671641.1


Basic Information

Item Value
RNA id XM_022671641.1
length 1426
RNA type mRNA
GC content 0.46
exon number 9
gene id hmg20a
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 29834082 ~ 29844607 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCTAACGTTACAGGTTCGGACACAGCCACTCGGTGTTTTGGGACGGGCAACAAAAGttctgtttaGTGTGTGAAGAGTAACAAGATATGGAAGAGCAGAGTGCTTCACCTGGAGCGAACACAGATAACAGCAGCCAGAGGAATGGAGAGGAGAAACCACGCAGGGCAAGTTGGACTAAaggaaggaagagaaagaagcCTTTAAAGGACAGCAATGCACCCAAAGCTCCCCTAACCGGATATGTACGATTTATGAATGATCGGCGGGAGCAACTGCGTGCCGAGAGACCGGACGTACCCTTCCCAGAAATCACCAGGATGCTTGGCAATGAGTGGAGCAAACTGCCGCCTGATGAGAAACAGCGCTATTTAGATGAGGCAGAGAAAGACAAGGAGCGCTACATGAGGGAGCTGGAGAAGTATCAGCAGACAGAGGCATACAAGCACTTCACCAGGAAAGTGCAGGAGAAGCAGAAGGgcaagagacacagaggagATGTGGCGCGGCAGTCTGCCAGGGAGGCTCTTCACGAGAATGACGGAGTGATAAAGGATCGGTCTGTGTTTGATATTCCTATCTTCACTGAGGAGTTTCTGAACCATAGTAAAGCTCGCGAGGCAGAGCTGCGGCAGCTGCGCAAGACCAATATGGAGTACGAGGAGCGGAACGCAGCGCTGCAGAAGCACGTGGAAAGCATGAGGAGCGCTGTGGACCGGTTGGAGGGAGACGTGCTGCAGGAACGTACACGCAACAGTCTGCTGCAACAGCACCTCGACACTCTCCGCTCTGCACTAACACACAGCTTCTCCAACGTGCCCCTGCCTGGCAGTGGAGAGACTGCCAGTCTGGACTCCATCGAGTCCTACATGAAGAAGCTCTACAATATCGTTATGTCCAACCCTCAGGAGTACGAGCACCTTATCAGTGTGGTGCGAGACGTGGTCACCCGCCTTGACAGGTAATTGAGGCATTCTGATCACATGACTGTGGAATCTGAGCTTCCCTGagctctgttttatttaaacatcaTACCCCATCCCATTTTTAAGAATTGTTTTATTAGATACacactttatttctctttttctacagTGCTATTTTTATCTGTTCTGTTTTCTTGTTTCCACATATTCATCAGTTGTTTATTCAATGTTTACTATGCTTGTATTTCATGATTTGTTTCAtagatatgaaaaaaatatgttcctTTCAGCATGCtgccattttttattataagagCGATTTtagacctttttttattttctttatacgATGTTAAGAAGTgacattttgtatttgtgttaaaAGAACCTTGTTGAAGCTGTAGTTAGTGTATTTGTGCTTTGCCACTCTTCTCTGTGCCAGCATTGTAGTACTCAACAAGAATTACACTGCAGTGACCAATAAATTGCATTTGCATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91106 lncRNA downstream 109994 29719229 ~ 29724088 (-) True G67537
TU91090 lncRNA downstream 171406 29662013 ~ 29662676 (-) True G67529
TU91092 lncRNA downstream 171406 29662013 ~ 29662676 (-) False G67529
TU91069 lncRNA downstream 266324 29566759 ~ 29567758 (-) True G67517
TU91042 lncRNA downstream 330771 29501604 ~ 29503311 (-) True G67500
TU91141 lncRNA upstream 91795 29935705 ~ 29935944 (-) True G67566
TU91147 lncRNA upstream 196355 30040265 ~ 30040488 (-) True G67572
TU91150 lncRNA upstream 221449 30065359 ~ 30065694 (-) True G67575
TU91222 lncRNA upstream 389963 30233873 ~ 30236715 (-) True G67628
TU91223 lncRNA upstream 433253 30277163 ~ 30277588 (-) True G67629
XM_022671638.1 mRNA downstream 21521 29665345 ~ 29812561 (-) True LOC103022709
XM_022671637.1 mRNA downstream 177689 29639675 ~ 29656393 (-) False LOC103031543
XM_022671635.1 mRNA downstream 177718 29639675 ~ 29656364 (-) False LOC103031543
XM_022671636.1 mRNA downstream 180180 29639675 ~ 29653902 (-) True LOC103031543
XM_007235041.3 mRNA downstream 197352 29623051 ~ 29636730 (-) True LOC103032078
XM_007245014.3 mRNA upstream 393019 30236929 ~ 30281397 (-) True LOC103043802
XM_007245015.3 mRNA upstream 393019 30236929 ~ 30281389 (-) False LOC103043802
XM_007245017.3 mRNA upstream 393019 30236929 ~ 30272508 (-) False LOC103043802
XM_007245016.3 mRNA upstream 393019 30236929 ~ 30272508 (-) False LOC103043802
XM_022671646.1 mRNA upstream 393019 30236929 ~ 30272382 (-) False LOC103043802
XR_002650206.1 other downstream 366855 29443356 ~ 29467227 (-) False fuk
TU90658 other downstream 1701303 28121262 ~ 28132779 (-) False LOC103041081
TU91366 other upstream 754485 30598395 ~ 30600908 (-) True atp6v1f
TU91422 other upstream 958800 30802710 ~ 30805567 (-) True G67755
TU91536 other upstream 1131967 30975877 ~ 30992883 (-) True G67830
TU91559 other upstream 1236884 31080794 ~ 31091017 (-) False tmem60
TU91562 other upstream 1236884 31080794 ~ 31091017 (-) False tmem60

Expression Profile