RNA id: XM_007236662.3


Basic Information

Item Value
RNA id XM_007236662.3
length 5064
RNA type mRNA
GC content 0.50
exon number 16
gene id cand1
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 3267964 ~ 3292593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCTCTCAACTTTGCCCTCTCCGTCTGGAGCCGCAGCTCCTCCCTCTTGCAGAGCGAAGCAGGACCTCCATTCAAACCTCCAAACTCAGGGGGATGCAAGTGTAACTCCGCCGCCCTGCTAGAGCCGCACAGAGACTGCAGAGAGCGTGGAGAACCGGCTTTGTGTCGCAGCGCTGCAGCTACGCGAGAAAGTGGAGGGGGAGGATAACTAGTGATTGTGGCCGCGATACTCACAAGTGGTTGCTACCAGCGAGCTGCTCCAACTGACTGACTGCAAATATGGCGAGCGCCTCATACCACATCTCTAATCTCCTGGAAAAAATGACTTCCAGCGATAAGGATTTCAGGTTCATGGCCACAAATGACTTGATGTCAGAACTGCAGAAAGATTCCATCAAGCTGGATGACGACAGTGAGCGGAAAGTGGTCAAGATGATCCTCAAACTTCTGGAAGACAAAAATGGCGAAGTTCAGAACCTGGCTGTTAAATGTTTGGGACCACTTGTTAGCAAAGTCAAGGAGTATCAAGTTGAAACAATTGTCGACACGCTGTGCACGAACATGCTGTCAGATAAAGAGCAGCTTCGAGATATTTCTAGCATCGGTCTGAAGACAGTGATCGGGGAGCTCCCACCAGCATCCAGCGGCTCTGCCCTTGCTGCCAGCGTGTGCAAAAAGATCACAGGCCGCCTCACGAGTGCTATTGCCAAGCAGGAGGACGTATCCGTGCAGCTCGAAGCCCTGGACATCATGGCTGACATGCTCTGCAGACAAGGGGGCCTGTTGGTGAACTTCCACCCCTCCATCCTGAACTGCCTGCTCCCCCAGCTGACCAGCCCTCGACTGGCTGTGAGGAAGAGGACCATCATCGCTCTAGGTCACCTCGTCATGAGCTGTGGAAATCTCGTCTTCGTGGATCTCATCGAGCACTTACTGTCTGAGCTCTCTCGCAACGACTCCATGTCCACCACTCGCACTTACATCCAGTGCATCGCCGCCATCAGCCGACAGGCCGGCCACAGAATCGGCGAGTATTTGGAGAAGATCATTCCACTGGTGGTGAAATTCTGCAACATTGATGACGACGAACTGAGAGAGTACTGCATACAAGCCTTCGAGTCCTTTGTTAGGAGATGTCCAAAAGAAGTGTACCCTCATGTCCCCACAATAATCAACATCTGCCTGAAGTACTTGACTTATGACCCCAACTACAActatgatgatgaggatgaagatgagAATGCTATGGATGCAGATGGGGTGGATGAGGACTATCAAGGAAGCGATGACGAATACAGTGATGACGATGACATGAGCTGGAAGGTGCGGCGGGCAGCAGCCAAGTGCCTGGACGCTGTGGTGAGCACCCGGCACGAGATGCTACCCGAATTCTACCGCACGGTTTCCCCAGCGCTTATAGCGCGCTTTAAAGAACGAGAGGAGAATGTGAAGGCTGACGTCTTCCACGCCTACCTGTCCCTACTCAAGCAGACAAGGCCAGCCCAGAGCTGGCTCTGTGACCCTGATGCTATGGAGCAGGGAGAAACACCGCTCACAATGCTTCAGAGCCAGGTGCCCATGAtagtgaaagctctgcataaaCAGATGAAGGAGAAGAGTGTGAAGACAAGACAGTGCTGCTTCAACATGCTGACAGAGCTGGTGAACGTGCTGCCTGGGGCTCTGACTCAGCACATCCCCGTGCTCGTCCCAGGAATTATATTCTCTCTAAATGATAAATCAAGCTCCTCCAATTTGAAGATCGATGCCCTGTCCTGTTTATACGTGATTCTCTGCAATCATCAGCCTCAAGTCTTCCATCCCCATGTCCAGGCCTTGGTGCCCCCTGTAGTGGCCTGTGTGGGAGATCCTTTCTACAAGATCACCTCTGAAGCACTTCTAGTCACTCAACAGTTAGTGAAGGTGATCCGTCCTTTGGATCAGACTGACGCCTTTGACGCGTCGCCCTACATCACTGACCTGTTCGCCTGCACCATCAAGCGTCTGAAGGCGGCCGACATCGACCAGGAGGTGAAAGAGCGTGCCATCTCCTGCATGGGTCAGATCATCTGCAACCTGGGAGACAGTCTTGGCACTGACTTGCCAGGGACGCTGCACATCTTTCTTGAGCGACTGAAGAATGAGATCACTCGGCTGACCACAGTGAAGGCACTGACTCTGATCGCTGGCTCCCCACTGAAGATTGATCTGCGACCCATCCTCGGCGAGGCTGTGCCCATCCTGGCCTCCTTCCTCCGCAAGAACCAGCGAGCGCTGAAGCTCAGCACTTTGGCAGCACTGGACATCCTTGTGAAGAACTACAGTGACAGTGTGACGCCAGCCATGATCGACGCTGTACTGGCAGAGCTGCCGCCACTGATCAGCGAGAGCGACATGCACGTCTCGCAGATGGCCATCAGCTTCCTGACCACACTGGCCCGTGTGCACCCTGACTCACTTTCCAAGATCAGTGGCTCTATCTTGGCAGAGCTGATAGCACTGGTGCGCTCGCCGCTGCTACAGGGCGGTGCTCTCAGTGCCATGCTGGAGTTTTTCCAGGCGCTGGTGGCCACCGGCACGGCCAGCCTGGGATATATGGACCTATTGCGGATGCTGACCGGCCCTGTATATGCACAGAGTGCTGCCCTCACCCACAAGCAGTCCTACTACTCTATCGCCAAGTGCGTCGCAGCGCTCACCCGGGCGTGCCCTAAAGAGGGCCCTGCCGTGGTGGGCCAGTTCATCCAAGATGTGAAGAACTCTCGTTCCACTGACTCCATCCGCCTCCTAGCCCTGCTGTCCCTGGGTGAGGTGGGTCATCACGTAGATTTGAGTGGCCAGCCAGAGCTCAAAACGGTCATCCTCGATGCCTTCTCCTCAGCCAGTGAGGAGGTGAAATCAGCTGCCTCGTACGCACTGGGCAGCATCAGCGTTGGTAACCTGCCTGAGTACCTGCCCTTCGTGCTGCAGGAGATTTCAGGCCAGCCCAAGCGTCAGTACCTGCTGCTGCACTCGCTTAAAGAAATCATCAGCTCTGCGTCTGTGGCCGGTCTCAAGCCGTATGTGGAGAGTGTGTGGGCTCTGCTGCTTAAACACTGCGAGTGCACGGAGGAAGGCACCCGCAACGTTGTGGCCGAATGTCTGGGGAAGCTCACCCTTATAGACCCAGAGACGCTACTGCCCAGACTAAAGGGCTATTTGTTATCAGGATCTTCGTATGCCAGAAGCTCGGTAGTTACTGCTGTAAAGTTCACAATTTCAGACCACCCACAGGCAATTGATCCCCTCCTGAAAAACTGCATAGgTGATTTTTTGAAAACGTTGGAAGACCCAGACCTCAATGTGCGAAGGGTTGCTCTCGTTACATTCAACTCTGCTGCCCATAATAAGCCCTCACTTATCCGAGACCTCCTGGACACTGTTCTCCCTCACTTATATAATGAGACTAAAGTGCGCAAAGAGCTGATTAGAGAGGTTGAAATGGGTCCGTTTAAACACACAGTAGACGACGGGCTGGACATCAGGAAGGCTGCGTTTGAGTGTATGTACACCCTTTTAGACAGCTGCCTCGATAGACTTGACATCTTTGAGTTTCTTAACCACGTTGAAGACGGACTTAAAGACCATTACGACATCAAGATGCTGACATTCCTGATGCTAGCCAGACTGTCCACTTTGTGCCCTAGTGCTGTGTTGCAGAGGCTTGACAGACTGGTTGAGCCTCTCAGAGCTACATGCACCACAAagGTAAAGGCAAACTCTGTAAAGCAGGAGTTTGAGAAGCAGGACGAGCTGAAAAGGTCCGCCATGCGGGCAGTAGTGGCCCTGCTGACCATCCCTGAGGCAGAGAAGAGCCCCCTCATGAGTGAATTCCAGTCCCAGATAAGCTCCAACCCCGAGCTGGCTGCCATCTTCGACAGCATCCAGAGGGACTCCTCTTCAGCCAACATGGAGTCTATGGACACCAGTTAAACTGCGCCACCATGCCTGACACCTTCACTTACAACAAAAAGCTGCAAGAAAACCAATTCTGGGGGACCCTTTTATCGTTCCATGCATTGCACTGAATCAAATATTGTAGGAGGAAAAGAAATATCaagaaaagcttaaaaaaaaactgagaaaagtaaaaaaaaaaaaaaaaaatcatgggaaAAAATGAAAGGAAGACGTACATTCTCGTAAGCTTCAGAGCTTATCATGTTCGTTTTTTTCAATAGAGAAGAAATTGCTTTGATTGTTCATCAGTCTTCGTTTTTCTCTCCCCACTCCCAGACCacctcttttgttttctttttttctttttttttccgggTTTAGTTCCAGTTTGATGATTCCAGAGGATCCACAGGTACCTCCACACACAGACTTTTGAGCATTGCTGAATCGAGGCACTTGAACAgatggcataaaaaaaaacagactgcaCGAgcttctccttttcttcttttgttgCGTTACCAGAGGAGAAGAATTGTTCTCTGCATTCTGGACTGCTGAGTTCTATAGGATTGATGGCGATAAATGCTAACATTCAGTCAGTTCAGATGATTTAAGGAccatctttcttttgttttctatgTTACCATATTTCTTACCAGACCAGATTTAATGGCTGTTTTTGTACAATTCGAATGTCATCTTGTGTCCCTCTCATCCCCCGTCTAAATGGTTGGTCGGACCTTGAAAGTTTCGACTGCGTTAGAAATATTCCATTAAAGAAGCGCGGCCGTGTGTCTTGGACAAATGAAACCTGGTTTGTTTACCCCCTTCCATGACCTTAAATGGCAGTTTAACATTCCACCCATTCGCAGATTTACATGGTGTAAACAGCATGTATTAGACATTCAGTGACCTAAAATACACTtggtgtgcgcgtgtgtgtgtaagattttcttttttgtttctttttcttttctttatttttcacctGATGACAGTTCTGTTTGGCTCAACCATATAGAAGTGAAACCTGAATCCAATGTTATGAGAAGTTGCTCTGTATGGACGTGAATTCCACACgtgaataaaaacaataagagTGGAGAATATTCTCTGATCACA

Function

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83050 lncRNA upstream 1077 3266308 ~ 3266887 (+) True G61560
TU83048 lncRNA upstream 22835 3244857 ~ 3245129 (+) True G61558
TU82883 lncRNA upstream 316870 2950681 ~ 2951094 (+) True G61401
TU82879 lncRNA upstream 336556 2851175 ~ 2931408 (+) True G61397
TU82850 lncRNA upstream 609825 2657918 ~ 2658139 (+) True G61370
TU83114 lncRNA downstream 101923 3394516 ~ 3397772 (+) True G61607
TU83120 lncRNA downstream 102186 3394779 ~ 3395394 (+) False G61608
TU83121 lncRNA downstream 102186 3394779 ~ 3395730 (+) False G61608
TU83122 lncRNA downstream 102186 3394779 ~ 3396035 (+) True G61608
TU83113 lncRNA downstream 104126 3396719 ~ 3397772 (+) False G61607
XM_007259740.3 mRNA upstream 610470 2653605 ~ 2657494 (+) True LOC103029880
XM_007259741.3 mRNA upstream 625860 2614208 ~ 2642104 (+) True wif1
XM_007259754.3 mRNA upstream 943704 2274367 ~ 2324260 (+) True lmo3
XM_022671229.1 mRNA downstream 50126 3342719 ~ 3373751 (+) False dyrk2
XM_007236657.3 mRNA downstream 68764 3361357 ~ 3373751 (+) True dyrk2
XM_007236658.3 mRNA downstream 69112 3361705 ~ 3373751 (+) False dyrk2
XM_022671231.1 mRNA downstream 69193 3361786 ~ 3373751 (+) False dyrk2
XM_015602283.2 mRNA downstream 69233 3361826 ~ 3373751 (+) False dyrk2
TU82609 other upstream 1332465 1921395 ~ 1935499 (+) True LOC103036328
trnay-gua_8 other upstream 1446188 1821689 ~ 1821776 (+) True trnay-gua_8
trnay-gua_7 other upstream 1446629 1821248 ~ 1821335 (+) True trnay-gua_7
trnay-gua_6 other upstream 1449363 1818514 ~ 1818601 (+) True trnay-gua_6
trnay-gua_5 other upstream 1449809 1818068 ~ 1818155 (+) True trnay-gua_5
TU83070 other downstream 3953 3296546 ~ 3303998 (+) True G61575
TU83069 other downstream 6496 3299089 ~ 3303998 (+) False G61575
TU83815 other downstream 2453611 5746204 ~ 5754284 (+) True LOC111192936
TU83965 other downstream 2689780 5982373 ~ 5993994 (+) True c7h12orf75
TU84211 other downstream 3558637 6851230 ~ 6855762 (+) True G62455

Expression Profile