RNA id: XM_015602384.2


Basic Information

Item Value
RNA id XM_015602384.2
length 4337
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC103036113
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9865360 ~ 9887488 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCTCTCCGTAGGCGCGCTAGGGAGGCCTCGCCACATCTGTGAGCGAGCAGCGAGGCGGAGTATTCATTAAATCCGGTGTTTTTCTGTGTTGGTGTGAGCTGTAGTCGCGGGGGTAATTTAATAAGAAGCTGTGTATTTAGTGTGTGGGGTTAAACTTGCGGGCTCGGGCTCTCGCGGCTCTGTTTTTGGCTTAAGAGTCGCGTTGAGGTGGGTCGGTCAGTGTAAACAGTagctgttgttattattattattattggggAGCTTGGTCACAACAGTATGGACCTTCCGGCGGTAAAGATGTCAGAAATGTGCTTTTCTAGTCGTTTCTGTCGTCGTTAAAGGAGTTTACTGATGGAAAACCCTTCGGATATGTTCTCCTGGTGCTGCAGTGTTGTGTAAAGGCGCGGCGGAGCATCGTTAGTCTCTTTCCTATGCAATATTAATGAGTGTAGAAGAGATCAGCCGCGGTTACTAATCGAGTTCTAGCTTTAATTAACGGTTAGCTCCTGTCCTGAGATCATGGAGGAGAGTATAGAAAAGCTAGAGGCGGACGATATCGTCATCATTGTGGAAAATGAGGCTGAGAGCAAGCCCATTCAGGAGGCCAACGCCAAGGAGGAGGGCAGCCAGAGCCTGCTGGACATCTGCCCCCTGTGTAAGCTTAGTTTCCACAGCAGGGAGCCCAAGCTCCTACCGTGCCTCCACTCCTTCTGTAAGAGATGCCTGCCCTCGCCCTCCAGGAACCTGCTGTACGCTGAACAGGGGAACAACCTCCAAATGCCACCTGAGGGTCAAGCCAAGCCCTTGAACGTGATCCGCTGTCCAGTTTGTCATCAGGAATGCATGGAAGTTGAGGTCTTGGATAACTTCTTTGCCAAGGATAGTATGGAGGTGCCAAGCAGCACAGTGGAGAAGACCAGTCAGCTGTGTATGAGCTGTGATGACAACACTGAGGCAACTGGtttctgtgtggagtgtgtggagtttCTGTGTGTCACCTGCATTGAGGCTCATCAACGGGTGAAGTTCACCAGGGATCACACCATCAGACAGATAGCGGAGATGTCTTCAGATGCAATGGGTGCTTCCACACAGAAGCCTGTTTTCTGTGATATCCACAAGCAAGAACCTTTGAAGCTGTTCTGTGAAACCTGTGACCGTCTGACTTGCAGGGACTGTCAACTGCTTAAACACAAGGATCATAATTATCAGTTTCTGGAGGATGCATACAGGAACCACAAGGATCATTTGGAAAAGATGACTGGTCAACTTCAAGAAAAGAGGAAGGCCATTGGAGATGTGTCGGACACAATAAACAATGGTCTTCAGCAAGTGGATGAAAACCGCAAGTCTGTTGCCAATGAGATTAAAAAGGCCATCTGCAATTTgataatggaaataaacagaaaagggAAGATCTTAATCAACCAGCTTGAGGCACTGACGAAGGACCatgaaacagtcctgaagaaACAGCAAGAGGATATCTCCTCCCTCACAAAGCATCTTGATCATGTGATCAGCTTCACAAAATGGGCAACAGCCAGTAACAGTGGCACTGCACTCCTGTACTGTAAACGACTGattatgtATCAAATCCAATACCTCATGCGAGCAAAGTGCAACACTTCTTATGTTCCTCAGAGTTCCGTTCGCTTCCAGTGTCGCTCTGCTTTTTGGGCTTCAAATGTTGATCTTGGTTCTCTACTGGTAGAGAAAACCCCTGTTCGCCAACCGAGCGGCCCACAGCCGTTCCCTTTCCAACAGATGCATCCTGGACCCAGACCTGATGGGCCTCCAGGACCCTTCCCAGGACCGCAGTCtcaacagcagcaacagcaacagcagcagagacagagcACTCTTGCCCAGCTCCAGATGCAGGTTGAGAAGCTCGCCCAGCACCCAAACCGACACCTTTCGCCCAATGCCTGGTCATGTTGCATGCGACCCCCCGGGCAGCTGCCCCCCAACAGGCCGATGCAGGGAGGCTCACCTTCCCAGAACCTTGCAAACATGCCCCAGCCAGCATGGAGGTATAACACCCCTCACATGAACACAAGGAGTCCCCCAACTCTGCTGCAGAACTCAGGCCTCCCACAACAGACTTTAAGAGGACTCATCAACAATTCCAACAATTTCCCTCCTAAACCCATGGACGTGCTGCAGGGACCATCCCGCTATTCCCAAAATGCACCTCTCTCAGGTCCTGGCCCTCACCCTTCCCAGTCCTCTCTACTTCAGGTAGGCAGGGAAAGGCTTCTGCAGAGGAACATGATGGAAGCTGCGTACCTCAGCAGGAGGCCTGAACCTGGTGGCCCGATGTCTATTTCTGCACCAAGACCCAGTTATCCTCCCCCTGTGCTCCCCACACCTGCCGACAGAACTGCACCAGGAAAACAGGCGTCTCCCATGTCTGCTGCTACCTCCTCAGAAGGAAAGACAGGGGCCGGACCCTGGAAGCGCTCGGAGCCTCCGCAGAGTGGGCCATCGAGCCTCACTGCGAAGAGGAGGCGGAAGTCATCCCCAGGGCCTGTCATCGTCATTAAGGATGAGCcagaagatgatgatgaagttCGTTTTGTACAGACCACTACAAAAGCTAGTCTTCCAGACAGTACGGGTGTGCAGTCTCAGACGCCTCAGCAGGAATCTTCTCCCGGAGCGGAGCAGCAGACTGATAGGACCCCTGACCCTGAGGAGGATCCTAATGAGGACTGGTGCGCTGTGTGTCAGAACGGAGGAGAACTGCTCTGCTGCGACAAATGTCCCAAAGTCTTCCATCTTGGCTGTCATATTCCTACTCTCTCTGCATCTCCAAGTGGTGAGTGGTACTGCACTTTCTGCCGTGACCTCGACTCACCGGAAATGGAGTATGACGTTGATGGAGGAGGaggttttaaaaatgtgaagcAGGATCCAGATTCAGATGCATTCACACCTGTGGATAAAAGaAAATGTGAGAGACTGTTACTCCGTATCTACTGCAATGAACTTAGCACTGATTTCCAGGAGCCTGTGACTCCATCTTCAATGCCGGAATATAATGAGATTATAAAGACCCCAATGGACCTGCTCATGGTGAGGAACAAAATGGAAGGCAAGCAAAACCCGGGTTACAAGAGCACTGAAGACTTTGTGGCAGATATGAggcttatttttaaaaactgtgcaATTTTCCACAAGGAGGATGCAGAGATGTCCAGTGTTGGTGTTAATCTGCAGAGCTATTTTGAAGAGCAGCTGAAGCTCTTGTATCCAGAACGAACCTTCCCTGATGTAAAGAAGGAAAGTACTGCTGCAGAAGTAGAACCCCCACCAGCAGCTCCTGAACCGCCTCAAACAGCGACAGAACCCCTTCAAACAGCTCCAGAAACCCCACAGGCAGCTCCAGAACTGCCACAAACTGATCCAGATCCAGCAGATACTGCTTCTGAACCTACAAAAACTGTGCCAGAACCTCCACAAACATCTCCAGAACCTTCAAAAACTGCACCAGAAACATCTCCCAAAGCAGCCTCTCCAGATCCACCTCCAGTGGAAGAGACTACGGAGCCTCAGATTGGAGCCCCTCTTGAAGAAGAACCTCAGATTGGAGCACCTGTGGAGGACATAGAAGAAGCTGAGGAGGACGCAGAAAGCTCTGAGAAACCGCAAGAGAACTGCAGCCCAGAGAAAGCAGCAGAGGAAGAGAATGGAAGTAAAGATCAGGAGGGCTGATTATTAGGCAATTTGGAAATGCTTCCTtgttatctctctttctctctctctttctctttctttccattttctttccaccatttctgtctttctctctttctctctttctctcctgatCCTGAATCCTATAGACATGACGTATGAAttttgcaataataataatattgtatacacAGTCATTGTAAAGAGCAATACAGCTCCTTAGATAATATAATATTGGCATAATAAATGCTGATTATGTAAAAAGATGTACTTTGAATTATGTTATGTTAATGATAAATAGAAAATgagatgataatgatgattaaATGATGTAGGCATTAGAAGGAACTGCATCAATTCCACTTTGACACCAACTACACATCTACTTTGTGTGCTTGTTATTCTTCTTCTGCAAACCATGgaatatttgttttagtttatttatttatgttttgttctACGTTTTAATGTGAACAGGTGCTCTGGAAAAGGAGCACCTTTAGAAATGAATTCCATGAACTGTTGAGCTTTGTATAATGTGTTGTTTTCACCCAAACACTAGTTGGTTTGGGGAAACTGGATGAAGTGGGACTGCGTTGGGGGTAAAAGCATTAAAGCTCATTTCTTAGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85155 lncRNA downstream 215172 9647552 ~ 9650188 (-) True G63107
TU85153 lncRNA downstream 223120 9637688 ~ 9642240 (-) True G63105
TU85056 lncRNA downstream 379127 9486022 ~ 9486233 (-) True G63042
TU85055 lncRNA downstream 382843 9482200 ~ 9482517 (-) True G63041
XR_002650189.1 lncRNA downstream 448277 9416136 ~ 9417083 (-) False LOC103022044
TU85180 lncRNA upstream 3528 9891016 ~ 9891758 (-) True G63125
TU85190 lncRNA upstream 20065 9907553 ~ 9909248 (-) True G63131
TU85196 lncRNA upstream 27077 9914565 ~ 9916622 (-) True G63136
TU85235 lncRNA upstream 186070 10073558 ~ 10074137 (-) True G63169
TU85237 lncRNA upstream 186741 10074229 ~ 10074477 (-) True G63170
XM_015602383.2 mRNA downstream 1341 9850930 ~ 9864019 (-) False fbln1
XM_007237094.3 mRNA downstream 1341 9850930 ~ 9864019 (-) True fbln1
XM_022671317.1 mRNA downstream 405666 9435114 ~ 9459694 (-) False arhgap8
XM_022671318.1 mRNA downstream 405859 9435114 ~ 9459501 (-) True arhgap8
XM_022671315.1 mRNA downstream 598481 9252337 ~ 9266879 (-) True nup50
XM_007232390.3 mRNA upstream 98816 9986304 ~ 10032671 (-) True LOC103042295
XM_007232393.3 mRNA upstream 507442 10394930 ~ 10405872 (-) True creld2
XM_007232394.3 mRNA upstream 537101 10424589 ~ 10433454 (-) False zbed4
XM_007232395.3 mRNA upstream 537101 10424589 ~ 10433143 (-) True zbed4
XM_022671332.1 mRNA upstream 1836979 11724467 ~ 11779849 (-) False LOC103026034
TU85152 other downstream 242572 9618661 ~ 9622788 (-) True G63104
TU84600 other downstream 1691558 8166678 ~ 8173802 (-) False LOC111192870
TU84255 other downstream 3127412 6671610 ~ 6737948 (-) False G62484
TU85294 other upstream 427311 10314799 ~ 10411231 (-) False G63217
TU85708 other upstream 2433067 12320555 ~ 12365739 (-) True G63516
TU86395 other upstream 4897833 14785321 ~ 14786149 (-) True G64034
TU86473 other upstream 5106676 14994164 ~ 14994832 (-) True G64060
TU86884 other upstream 6697577 16585065 ~ 16585647 (-) True G64387

Expression Profile