RNA id: XM_007237086.3


Basic Information

Item Value
RNA id XM_007237086.3
length 1657
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC103036813
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9889217 ~ 9898004 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGAGGGGGagttctttgcagaattgttctGTTCAGCAGCAGAAAGGGTTTCGTAATCGTAGTTACAAGAACAAACTGCAGAAGGAACATGGCTTTGACGGCTAAGAGTCACTCAGTCACAATGAGTGATGGGTTTAAAATCCCACTCATGGGGATAGGGACATATGGGGATCCAAGAACGacTCCTAAAGGAACAGCATATGAATCAGTAAAGTATGCCATTGAAGTTGGATACAGGCATATTGATGGGGCATTAGTGTATTTCAACGAGCATGAAGTGGGCCAAGCCATCCGGGAGAAAATTGCTGATGGAACTGTCAAACGAGAGGACATTTTCTACTGCGGGAAGCTATGGAACACTTTCCACCCTCCGGAGCTTGTGAGACCAGCACTGGAGCGCACCCTCAAAACCCTGCAGCTGGACTACGTGGATCTCTATATCATTGAAATGCCCATGGCTTTCAAGCCAGGAGATGTCTTCTACCCAAAAGATGAGAATGGGAAGTATATATACCATGAGACGGACCTCTGTGCAACATGGGAAGCCTTGGAAGCTTGTAAGGACGCCGGCCTGGTCAAATCACTTGGAGTGTCCAACTTCAATAAGAGGCAACTTGAACTGATCCTGAATAAGCCTGGCCTAAAGCACAAACCTGTCTCGAATCAGATTGAGTGCCACCCGTACTTCACTCAGCCTAAAATGATGGAATTCTGCAAGCAGCACAACATCGTCATTGTTGGATACAGTCCTCTAGGAACATCTAGAGATCCATTCTGGGTAAATTTAAAGAGCCCTCCTTTGTTGGAGGATGAGCTTCTGGTGTCTCTTGCCAACAAGTATAAGAAGACGACAGCACAGGTGGCCCTGCGATTCAATGTCCAGCGAGGAGTCGTGGTAATTCCCAAGAGCTTCAGTCTGAAGCGCATTAAAGAGAACTTTGAGATCTTTGACTTTTCTTTAACCGATGATGAAATTAAGGCAATAGAGGGGCTGAACAAGAATGTCCGATTTGTGGAGGTTCGCATGTGGGAAGATCATCCAGAGTATCCATTCAATGAAGACTATTAGGCATTTTGGGTTTTTACTGGAGCAGCAAACACTTCAGACAGCAGCACTGCCTCATTTCAATCTcatctgttttattaaaagaCGTAATTATGCTTAGTATGTGCTTTGTATGGAAGTTTAAAAAGGATGAGTCAAACTCTATTTTTCTACACCATTATCTTTACATCAATAACACATTTTACCTGTGATTTTGAAaacacatgattaaaaaaactgttatcaAGAAAACATTTCTTATATAAAGGACAATGACAAAAGAAAGTAACTCTTGCTTTTTCTAAAGTTGTGAGGTAATAAACAGTTAATTACTTTACTTACAAACATGCTTTTTTGTATTTGCCTTCAAAGTCATCATTATTGTTACCAAAGGAAAGCTTACACGGGTTAAGCTGTAAGAgattgtgtgttttgggcacaACTTGTCTAAACAGGGGCAGACCCAGTAAATGTTCTGTCTGGGATTGTTTCAAACTGACTGTGTGACTGTGGCACCATGCCCTCAATAAGCCTCCACTCTCTCTGCTGACTGTTGTTGTTACCTGTATCTTAAAGCTGTGAAAGGTCTTATTAAATGTGAATACACTTTA

Function

GO: NA

KEGG:

id description
K00251 AKR1D1; 3-oxo-5-beta-steroid 4-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85101 lncRNA upstream 4942 9882115 ~ 9884275 (+) True G63081
TU85086 lncRNA upstream 22716 9810872 ~ 9866501 (+) True G63067
TU85064 lncRNA upstream 244706 9642481 ~ 9644511 (+) True G63050
TU85061 lncRNA upstream 354386 9534573 ~ 9534831 (+) True G63047
TU85058 lncRNA upstream 388523 9500304 ~ 9500694 (+) True G63044
TU85138 lncRNA downstream 74248 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 82514 9980518 ~ 9984728 (+) True G63091
TU85141 lncRNA downstream 93754 9991758 ~ 9998972 (+) True G63093
TU85149 lncRNA downstream 175110 10073114 ~ 10073399 (+) True G63101
TU85151 lncRNA downstream 179675 10077679 ~ 10077996 (+) True G63103
XM_007237093.2 mRNA upstream 106081 9780471 ~ 9783136 (+) True LOC103038615
XM_007237082.3 mRNA upstream 195928 9685357 ~ 9693289 (+) True LOC103035797
XM_022671319.1 mRNA upstream 249937 9618666 ~ 9639280 (+) True LOC103035489
XM_015604954.2 mRNA upstream 465936 9361035 ~ 9423281 (+) False phf21b
XM_022671320.1 mRNA downstream 2481 9900485 ~ 9925895 (+) True LOC103038308
XM_007237091.3 mRNA downstream 31504 9929508 ~ 9945834 (+) False usp15
XM_007237087.3 mRNA downstream 31524 9929528 ~ 9967291 (+) True usp15
XM_007237088.3 mRNA downstream 31524 9929528 ~ 9967291 (+) False usp15
XM_007237089.3 mRNA downstream 31524 9929528 ~ 9967291 (+) False usp15
TU85065 other upstream 239130 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 448653 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1349094 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1355985 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3033455 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2570046 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2761444 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3258222 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4846731 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6524230 16422234 ~ 16426613 (+) False arid2

Expression Profile