RNA id: XM_022671322.1


Basic Information

Item Value
RNA id XM_022671322.1
length 5814
RNA type mRNA
GC content 0.46
exon number 20
gene id usp15
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9929508 ~ 9967291 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGAGCGATTCTATTTTCAGAGGGGCTCTCTGGATGACTGAAGCGCTACATGGAGCGATCTGCTAGGCACAGCATGCAGGAgGTGGTGGAGCAGGGAATGTTCGTGAAGCACTGCAAAGTGGAGGTCTACCTCACTGAGCTGAAACTATGTGAAGACAGCAACATGGACAATGTTGTCACTAGACGCTTCAGCAAAGCTGATACAATAGACACTATTGAAAAGGAGATGCGAAAACTGTTCAGCATTCCTGATGAGATGGAGACCAGGTTGTGGAACAAATACATGACCAACACGTTTGAGCCTCTGAACAAACCGGACAGCACCATTCAGGATGCTGGGCTCTATCAGGGGCAGGTTCTAGTTATAGAGCAGAAGAATGAGGATGGAACGTGGCCTCGCGGTTCCTCCACGCCAAAGTCATCTGGTGCTTCCAATCTCTCTGCTTTACCAAAGATCTCCCCTACATCTCTCACAAACAATCAtaacagcagcttcagcagcagGAAtgtgaaaaactCTACTTACAGCCTTCCGTCCTACCCGCCCTATAACAGCTATGAATATTCAGACCAGAGCCGGCACAGTGAGAAAGAAGGCCTGTGTGGCCTCTCCAATTTGGGGAACACCTGCTTCATGAACTCTGCAACACAGTGTTTAAGCAATATTCCTCCGCTCACTGAGTACTTCTTGAAGGACAAGTACCAGGATGAACTGAACGAGGATAACCCGTTAGGGATGAAAGGAGAAATCGCCAAGGCTTATGCTGAGCTTATCAAGCAGCTCTGGTCCGGCAAATACAGCTACGTCACCCCTAGACCTTTTAAAACCCAAGTGGGACGCTTTGCCCCTCAGTTCTCAGGCTACCAGCAGCAGGACTCTCATGAGCTGCTGGCTTTTCTGCTAGACGGCCTACACGAAGACCTGAACCGCATCAGGAAGAAGCCCTACATCCAGCTCAAAGATGCTGACGGACGGCCAGATAAGGTAGTAGCAGAGGAGGCATGGGAGAACCACATCAAGAGAAACGACTCTATTATCGTGGACATCTTCCATGGCCTCTTCAAGTCCACCCTGGTCTGCCCCGTGTGCTCTAAGATCTCTGTGACCTTTGACCCTTTCTGCTACTTAACGCTTCCTCTCCCCATGAAGAAGGAGCGGACGCTGGAGGTCTACCTGGTGCGGTTGGACCCCCTTGCGAAACCCACGCAGTATAAGCTGACAGTGCCCAAAGTGGGCTACATCTCTGACCTCTGTGCTTCTTTATCTGTCCTGTCTGGAGTTGCTGCTGAAAAGATGATTGTCACTGATATCTACAACCACCGGTTCCATAGAATTTTTGCCACCAATGAGAACCTGAGCAGTATAATGGAAAGGGATGATATATATGTGTTTGAGGTGGCAGTTAACCGTCTAGAAGACACAGACCATGTGGTGATCCCTGTGCATCTTCGAGAGAAATATAAGCAGTCAGGTTATAACCACACTAGTACCCCACTGTTTGGGCAGCCCTTCCTCATAACCGTCCCTCGAACACTCAGTGAGGAGAAATTCTACAACCTGCTGCTTCTCCGTCTGTGTCGTTTTGTGCGCTCAGCCCTGGAAGAAGAGGAGTCTGATGAGACTCATTCGTCCAAGCAGCATGCCATCAACGGGAACGCCACCAACGGTATACTGGAGGAGGGCTCGCCCAGTGAAATGGAAACTGACGAGCAGGATGATGAGTCCAGTCAGGACCAGGAACTTCCTTCTGAAAATGACAACAGTCAGTCAGAGGATTCAGTGGGCGGGGACAATGACCTGGAGAACGGGGTCGGCCCAGAGAACTCGACCAAAGGCCAGCAGCAGGTCACGGGCCACAAAAAGCGACTTTTCACATTCCAGTTCAATAATATGGGCAAGACTGACTTGAGCTTCATTAAAGAGGAACCGCGGCAGATCCGATTTGATGAGGGACACCTTCGACTCAGCGACAGATCATATCTCTCTTTGGACTGGGAACCAGAGATTAAGAAGAAGTATTTTGATGAAAGTGTAGCTGAAGACTTTGATAAGCATGAGAGCATGGAATACAAACTTCAGAAAAAGGCCTTCTTCAAACTGAAAGACTGCATTGAACTGTTCACTACCAAAGAGAAGTTAGGAGCAGAGGACCCATGGTACTGCCCAAGCTGCAAGCAGCACCAGCAAGCGACTAAGAAGCTTGATCTGTGGTCCTTACCTCCAGTATTGGTGGTCCATCTGAAGCGCTTCTCTTACAGCCGCTACATGAGGGACAAACTGGACTCGCTGGTGGACTTCCCACTTCATGATCTGGACATGTCAGAGTTCCTCATTAACCCTAACGCTGGGCCATGCCGCTATGACCTCATTGCGGTTTCCAACCACTACGGAGGAATGGGAGGAGGACACTATACTGCCTATGCCAAAAACAAAGACGATGGCAAGTGGTACAACTTTGACGACAGCATCGTATCTCCAGTCAGTGAGGATCAGATTGTGTCCAAAGCGGCATACGTACTGTTCTACCAGCGTCAGGACACAGTGAAGGGAACTGGCTACTTTGCCTTGGACCGTGAGGATGCAGAGGAGCAGGAGAGCGCGTCAGCACAAGGAGCCAACGCCCTGAGTGACGAAGacgaagaggaggaagaggaggaccTCAACGACAACGAGCAGGACGAGGAGCTGGAGCCGAACCACGACATCACCATGAACACCCACTGAGCTTGGACAGACATGGGCAGGAGGCGGCGGCGGCAGGTGGTGGGGGTCATCCGAAGCCATATCGGGAGTGAGCTGAGCGGTCAGTCCGGAGAGTCCAGTCCAGATAGCCGTCCTCCATCTCTGCTTCAGCAGTACCTGCGACTACCGGCGAGAGCATGGTGTCGCATGCACAGGCGGGAATCAGGCTGGGCCGACCAATCAGGGCCTTGTTTTAATGGCCAATGTTGCAGGTTGatgcttttttcccctcttttttGTGCCCCTCTCCCACTCTTTCCCATTTTTCatttgttcgtttttttttcccctcactaCATGGCTTTACTCCTCCACTCCTCAGTGAAATGTGCCCTGGGAGTCCTGATGGTGGGGGAATAAGCAGAAAAAAACGGATTTGTGGGAAGTTGAAATACACACAATACCTGAAAACGCTCAGCACGGCGAGTGTCGCTCCTTGGATTTTCCTCTTggtagattttttaaaaaagaagtatatatatattgcagagTGCAAGAGAGATGCATTTATGCATTCATGAGTAGTGTTTTACTTTTATCATCGTTTTTGCCTTGTACATAATTTTGGATGGACAGCAAACCTCTGGGTTTTAAGGATATTGAACATTTGTGGACTGTTTTGTTGCACAAACACTCGTTCGTTTTTTTATAGCTAGTATTAGTGCCACGCATACTGCAGAGTTTACGCCTAACCAGTGTCCCCTCGATCAGCTGCTTAACTCGCTGCCTTTAAAAGTGGTCGCAAATGCCATCCACAGGCAGATCCACTGGTGTGAGATGAAATAAGAAGAGTACTACAGTAATATGTCGTGTACCATTTATGGTGAGTTGATTTTAGGGTAACTTAAGTCTGGCGCATAACGGTCTCCGGACCCCTCGTCTTTCAGCTACTTCAGAAAACCAAACGCTTTGGTTACAACAGGTGTGACTCGGCCCATAGCTTTAGCGTCGCTTCAGGATTTATTAAAATGAAGCCTCATTCTTCTTCACCTTCTCATCATAgaggctttttcttttttaaatattgagatTATGAACATTTTGGTGATGCAATAGATTTCCCGTCTTTGGTCTCCATCACCTCGGCCTTAAATCTAATCTCAGACTGTTGCCTTTACTTTGCACAATTCACAATTATTTTATCATCACACTGTCGTCTGACCCCCCCCCGCTCCTCACCTCACTAATACATAACCATAATGCACACTAGCACCTAAtctcacacataaacacacacaggcttaTAAACGCATGCGCACAAACGCAATTCTGACTTCTACCTTAAGCCCTAACTTAAACACTCTTAAGAAATAAAAGGTGCTACATGAGCGATGCCACAAAAGTGCcacttttttattctataaataacTGAAATTCTACCACTAACTGCACTGGTGGAGTATAATTATGCAGtataattaattacttaattgTGTTTTAGTTGTATATTTAACCAATGTGATTCTCCAAAGAATTGACGTGTATGTTCCTCTCAGCAACACCGTAGCAGCCACTTGGTAAAGCCAAGCAACCAACTTTGATATCATTCtaaccacctagtaaccacttACCTGCACTGTAATCTGGGAGCTACACCATAGCAGCCAGTACAGCTAATTATGGGATTTAACAAGAGGATATTTGATCTAGCGTTTTATCAACTCCATTGCAGCCGCCTAGGAACACCACAGCAAAAAGCTTATATACCATTTTAAGCAGGGACCTAATAAACTTGAACACCATTGCAGGCAGGGACATTTAGCAAATTGGTAGAAACAACCTAGGATAGCATATCagccacatagcaaccaccatagatACTGTATCAACCCCTTTACAAGTCTCTtccaaccaccttgcaacaccacAAAAAACAACTTTGATACCACTGCAGCTACCCAGTAACCACTTGCTTATCACGCAAAACTATAGAAACAACAGGAAATACCATATTAACCACTAATCTACACCACAGCAGCCAGTacagttaattttattttttgatgaaTGTTTAAGATTTAACAGCAgcacatttcacatttcattaATGTCAATAGTGAATTTCTGCCACTtaggaacaccacagcaactattTTAAATACCATTGTATTTAACCACCAGAGATACCATATAAACCACGTTACAACACTCTTCTTGCTGATGTGGCATTATTTCCAGATGGTTGGTATAGTTAATTATGCTTAGTTTCACAGTGTGGCTCCTGATTTTCTTTTCGAACCAAGCAGGGAAACACCTGACACACACGCCCCTTTAACGAAAATGGTTCTTCATGGAagcaaaagtggttcttctgtggCGTCACTCAAACAACCCTCAGTGTAGACCCTTTCTTTATAAGAGTGTAGGCGCTGACTGACTGCTGTAATCAGACAGAAATGAGCCACTTCTCAGACTGGCGTCCAGAATGTATTAGAATAAAGCTTGGATTCGCCTGAATTTGGATAGATGCCTTCTTTAAGTGTAGGGGAGTGAGAAGTGAGtcgcttttctttcttttgcctttattttcttttggttGAATGTGTTTTCTCGGGGTCTCGGGTGGAACATCACAGATCATTTTCATTGCCTTTTATATTAGCTATATAAAAAGCAGGGGTTCTGCTGTACGTGTCTTCTGTGTGGTGGGGTGAGACGGGGCGGGATGGGATGGGTGGGACAGTGGCCACAGGGACAATCAGACTGCGTGAGACTGATTGCATAGGctttataaatactgtatataaaagttCACTCTGTGAGTGCACATTtgataaatttatttatttatatgtaagcAAACCAATGTATTTAAGACCACTGGAAGACAGAATAAGTACGGTGGGGGGGCTTCCAGTCCGGCCGTGTGAGCGAACGTGGCTGGGCTTGAAGTCTGCTGAAGGATGCTCTTATCACCTGGAGTTTTTTTTCTATCCTAAAGGTTCATTAGGACATCCTTGCATGATGACGGGGGATACAGCGTTTGGCTGCACTTGAGTTCACTTGGGTTTACATTTGAAATGtgcatgtgtatttatatacagaCTTCAATAAAGTTGTGTAAAGCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85101 lncRNA upstream 49178 9882115 ~ 9884275 (+) True G63081
TU85086 lncRNA upstream 66952 9810872 ~ 9866501 (+) True G63067
TU85064 lncRNA upstream 288942 9642481 ~ 9644511 (+) True G63050
TU85061 lncRNA upstream 398622 9534573 ~ 9534831 (+) True G63047
TU85058 lncRNA upstream 432759 9500304 ~ 9500694 (+) True G63044
TU85138 lncRNA downstream 4961 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 13227 9980518 ~ 9984728 (+) True G63091
TU85141 lncRNA downstream 24467 9991758 ~ 9998972 (+) True G63093
TU85149 lncRNA downstream 105823 10073114 ~ 10073399 (+) True G63101
TU85151 lncRNA downstream 110388 10077679 ~ 10077996 (+) True G63103
XM_022671320.1 mRNA upstream 7558 9900485 ~ 9925895 (+) True LOC103038308
XM_007237086.3 mRNA upstream 35449 9889217 ~ 9898004 (+) True LOC103036813
XM_007237093.2 mRNA upstream 150317 9780471 ~ 9783136 (+) True LOC103038615
XM_007237082.3 mRNA upstream 240164 9685357 ~ 9693289 (+) True LOC103035797
XM_022671319.1 mRNA upstream 294173 9618666 ~ 9639280 (+) True LOC103035489
XM_022671324.1 mRNA downstream 74912 10042203 ~ 10070882 (+) True il17rel
XM_015601062.2 mRNA downstream 343150 10310441 ~ 10316421 (+) True pim3
XM_007232396.2 mRNA downstream 441730 10409021 ~ 10420809 (+) True alg12
XM_022671327.1 mRNA downstream 472723 10440014 ~ 10464718 (+) True brd1
XM_022671328.1 mRNA downstream 472723 10440014 ~ 10464718 (+) False brd1
TU85065 other upstream 283366 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 492889 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1393330 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1400221 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 3077691 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2500759 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2692157 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3188935 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4777444 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6454943 16422234 ~ 16426613 (+) False arid2

Expression Profile