RNA id: XM_007237093.2


Basic Information

Item Value
RNA id XM_007237093.2
length 2666
RNA type mRNA
GC content 0.55
exon number 1
gene id LOC103038615
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 9780471 ~ 9783136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCATGCCCATGTTCACCCATCCATGAATGAATGCTGCCTTAGCGCACATGCTGCACATTCAGACCCAATGAAAGAGCTGAGAACAAAGTGTGCagactaactcactaacacacacacgcacacacacacaaacactcactgaACGAGCGGGCTTCTATTAAACAAAGTGGTTGGTCCTAATGTTCTGACAGGGTTCAACCAGTGCTGATCCATCCTCAGTGGTGAGAAGGTGGGCACAGGTTTATTCCAGagccaaaaaaatgaaaatgaatggcTTTGGGGGAGGAGTTGTGAGGACCACCCTccaccccctctctctttcactctcttactcactctctctctctctttctgaaacAGAGGATTCCCTCTCTCTGGTGCGCGCGCTGAGCCAGCCGcctgttgttgtgtgtgtgtgtgttttttttctctctttttttgacGTCAGTAATCATCGTTCTTTCTCTCATCCGGGTCTTCAAACTCTTCAATCTCTCGTGCTCTCGTGGTTATTTACTTTACTGAGCGAGCGCGCGCTGCACAGCTTAGTCGCTCTCTTGCTTGCTCTCTCGTTCCACACTCTCGTACGAGCGCGCGGGCgtacgcacgcacgcacgctcGCGCatgcatacatatacacacacacatacatacacgcGCTGGTGACACTGGAGAGCGGCGgcatcagcagcaggagcaggaggcTCGTGCGTGCGTCCGTGCGTGCCGCGTGCCGAGGGACCCCCCGGCTCTCGTGCAGCTCTGCCCCTCTTGTTCTCCCGCACGCTCTTTTTTGATGGCTCGGGCATGGAGATGGAGATAGCCCTGGTGAGCTTAGAGAACGGCGGCGCGCGCACGGGCTCCCCTCGCAGCCCTCCCCCGAGCCCGTGGCGCACGGAGCCCAGCGCGCGCCTCTTTGACGATGACACGCTGGATGAAGCCGCCGCCGTCGCCGCGCTGGACATGGCGAGCGCCGAGCGCGTGCTCATCAACGTGGCGGGCCTGCGCTACGAGACGCGCCTGGGCACGCTCTCGCAGTTCCCGGACACGTTGCTGGGCGACCCCGAGAAAAGGATCAAGTACTTCGATCCCCTGAGGAACGAGTACTTCTTCGACCGGAACCGGCCCAGCTTTGATGGCATCCTGTACTATTACCAGTCCGGAGGCAAGATCCGGAGGCCCGTCAACGTGTCCATTGATGTCTTCGCTGATGAGATCCGCTTCTATGAGCTGGGAGATGAAGCCATGGAGCGCTTCCGCGAGGACGAGGGCTTTATCAAAGAAGAAGAGCGACCGCTACCTGAGAACGAGTTCCAGCGCCAGGTGTGGCTTATCTTCGAGTACCCCGAGAGTTCCAGCCCTGCTCGGGCCATCGCCATCGTCTCCGTTCTAGTCATCACCATCTCCATCGTCACCTTCTGCTTGGAGACTCTGCCGGAGTTCCGGGATGAGCGAGAGCTGGCTGcgaccagcagcagcaggacgGCAGAGACCAATGGAACTCGCTCCAGGCCTTCGCTAACTTTCGCCGACCCCTTCTTCATCGTAGAGACTACTTGCGTCATCTGGTTCACCTTTGAGCTGCTAGTGCGCTTCCTGGCATGCCCAAGCAAGTCTGTGTTCTCCAAGACAGTCATGAACGTCATTGACGTCATGTCCGTCATGCCCTACTTCATCACGGTTGGCACGGAGCTGGTGGAGCAGCAGCACGGCCCAGAGCACGACGACgtccaacaacagcagcagcagcaacagcaggcCATGTCTCTGGCCATCCTCAGGGTCATCCGACTGGTCAGGGTGTTCAGGATCTTCAAGCTGTCCAGGCACTCTAAAGGCTTGCAGATCTTGGGGCAGACTCTCAAGGCCAGCATGCGGGAACTGGGCCTGCTTatcttcttcctctttattGGGGTCATACTGTTCTCCAGCGCCGTCTTCTTTGCAGAAGCTGATGAGCCTGAATCGCACTTCTCCAGCATTCCCGACGCCTTCTGGTGGGCTGTGGTGACCATGACCACTGTAGGTTATGGGGACATGAGGCCAGTCACTGTTGGGGGCAAAATCGTAGGATCCCTGTGCGCCATTGCTGGCGTATTGACGATTGCGCTCCCAGTGCCTGTTATCGTGTCCAACTTTAACTACTTCTACCACAGGGAGACGGACCAGGACCAGGCCTCGCTCAGGGACGATGGCGGCCGCGAGAGTCCGTCGACCGCGGGGTTGGCAGGAGAGGGGGACAACGAGGCAGGGCTGGATAACTCGCCTGCAGAGAAACCTAGTGTGAaagtgaacagcagcagcagcagcagtgtggacATTAAGCGTTCACTGTACGCATTCTGCTTGGACGCAAGGGAAACGGACCTGTAGGTGTCACAGGTCATTGACCGGTGCACCACAAATGCAGGTGCAAACATCagactacttttttattttgtctctaGGTCTGTCTAAAAAGAAACCAAGTTCAAGACAAGTCCTTTTGCACAATCGACTGGTTTATCAACAGGTTGCTGCAGTCTTATAATGGTTTTATCAATAATCATATATTAAAATAGGACTTTAATATAGAATTCAATAGCCTGTTATAAGTCAAAATGTGAGGATGTGGTTGATGAAGAAAATCTGGATTTGACTTGAAAGGCCTTAACTGAGCTGGCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04878 KCNA5, KV1.5; potassium voltage-gated channel Shaker-related subfamily A member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85064 lncRNA upstream 135960 9642481 ~ 9644511 (+) True G63050
TU85061 lncRNA upstream 245640 9534573 ~ 9534831 (+) True G63047
TU85058 lncRNA upstream 279777 9500304 ~ 9500694 (+) True G63044
TU84976 lncRNA upstream 297943 9482262 ~ 9482528 (+) True G63027
TU84967 lncRNA upstream 320783 9433659 ~ 9459688 (+) True G63022
TU85086 lncRNA downstream 27736 9810872 ~ 9866501 (+) True G63067
TU85101 lncRNA downstream 98979 9882115 ~ 9884275 (+) True G63081
TU85138 lncRNA downstream 189116 9972252 ~ 9976111 (+) True G63090
TU85139 lncRNA downstream 197382 9980518 ~ 9984728 (+) True G63091
TU85141 lncRNA downstream 208622 9991758 ~ 9998972 (+) True G63093
XM_007237082.3 mRNA upstream 87182 9685357 ~ 9693289 (+) True LOC103035797
XM_022671319.1 mRNA upstream 141191 9618666 ~ 9639280 (+) True LOC103035489
XM_015604953.2 mRNA upstream 357190 9361035 ~ 9423281 (+) False phf21b
XM_007237086.3 mRNA downstream 106081 9889217 ~ 9898004 (+) True LOC103036813
XM_022671320.1 mRNA downstream 117349 9900485 ~ 9925895 (+) True LOC103038308
XM_007237091.3 mRNA downstream 146372 9929508 ~ 9945834 (+) False usp15
XM_007237087.3 mRNA downstream 146392 9929528 ~ 9967291 (+) True usp15
XM_007237088.3 mRNA downstream 146392 9929528 ~ 9967291 (+) False usp15
TU85065 other upstream 130384 9646579 ~ 9650087 (+) True G63051
XR_002650190.1 other upstream 339907 9433437 ~ 9440564 (+) False LOC111192948
TU84760 other upstream 1240348 8533348 ~ 8540123 (+) True LOC103041471
TU84764 other upstream 1247239 8532759 ~ 8533232 (+) False LOC103041471
TU84211 other upstream 2924709 6851230 ~ 6855762 (+) True G62455
TU85565 other downstream 2684914 12468050 ~ 12468902 (+) True G63432
trnag-gcc_1 other downstream 2876312 12659448 ~ 12659518 (+) True trnag-gcc_1
TU85654 other downstream 3373090 13156226 ~ 13161320 (+) False LOC111192955
TU86374 other downstream 4961599 14744735 ~ 14745082 (+) True G64015
TU86778 other downstream 6639098 16422234 ~ 16426613 (+) False arid2

Expression Profile