RNA id: XM_007237357.3


Basic Information

Item Value
RNA id XM_007237357.3
length 2938
RNA type mRNA
GC content 0.47
exon number 14
gene id ptprr
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 21994110 ~ 22100636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgcCTGCTCTGATAGAGCAGCAGATGCTacactgtttgtttttctgcgAGCATTCCAGGCGTCTCGTGCCCGTGTCTGAGATCTGAGGCGCAGCGAGAAGAGAAAGGGGTGCCTCGGATCCTCCTCAGGCTGTCACACCGTCACACCGATGGTGTATTGAGTAGTGCACGGAGAGATGAATGGACGAAGCAGCGTCTGCGTCCTCCTTTCATACCTGATCAGAGTGACCGCTGCAGGAAGCTTCTCAGGAGATGATGAGAGTTATCGTCCACAACATGACAACACTGTGCCAGCTGCCCCAGTGTATCAGCAAGTTGGTTCTAAAGGCTTGGAGCATAGTGCAGTTTTCCATGCCCAGTCCAGAGCCCGGATAGCCAAACTAATACCCTCCACACTCCTCGACTCACGTTTCCGGCAGATTCCTCAGGACCACTCAGGAGTCAATTTTTTAGCCAGGACAGGCCATGAGGTGCATGTGGAGAATACTCCTATATCAACccatcacatcatcatcatggCTTTGCAGGTGGATGTACGGAGGTTAAATGTAACTCTTCTTCAATTGTTTCGGGAGGGTGTGGCCACTGCCCTGGACATTTCTCCCAGCCAAGTGCACATCAACCGCCTCAATGAGCAGAAAAATGGCATTGAGCTGTATGTGTCATCTGACAGAATGGGTACATCTGAACCTGTGTCCTCAGAGGAGGTGATCCGCTCACTCAACATCAACTCACTCCATCACAGCCTCAGGCGTTTCGGCATCACTGAAGTCTCCTCTGAGAAAAATGTTCTTCAAGGGCAGCACGAGCGGGACAACTTGTGGAACAAAGAGGGTTTCTACGCTGTGGTTATCTTCTTCACCATCTTTGTTATCATCATCACCTGTTTAATGgtTCTTTACCGCCTGAAAGAGAAGGTTGAGTATTCAGACAGTCAGCTGAAGGGGCCAAGTGTGCTCAGTCAGGACATTCACTTGGCACCAGTTGCCGTGCATGAAGCTCAGCCACCACTGAGCCAGACAAGCAGCATGGTGCAGGCCACTCCAACTCTCAAGCCTGCCTGCACCACCATAACCTCTGGAgcccccaccaccaccctcagCCACAACCCCAGCATCCTACATACACACGCCACCACCACTGTATCTGTCCCCCACAGCGCCCCCTATCCCGTTGTGCCTGACATCAAACCCTGCCTGTCCTCCAGCCCCTCTCCATTCAAGATGAAGCCTGCAGGCCTTCAGGAGAGGCGAGGCTCGAATGTTTCCTTGGTGCTGGATATGAGCGCTCTGGGCTCTGTGGAGCCTCTGAACTGTGGAGAGAAGACTCCTCGGGAGAGGGCTGCCCAAGAGTACTTAAGGTCGGCCGGCCGAGCTCTCTCACGGCAGCAGCTCCGAGATGTCACACTTAGCACACAAGCTCTTCAAGCTGAATTTGCTGAAATTCCAATGAATTTTGTGGATCCAAAGGACCTGGACATCCCCAGTCATGGAACCAAAAACAGATACAAGACCATTTTGCCAAATCCACATTCCAGAGTCATTCTGAAGAGCAAAAGTTCCTGTGACCCTTTCAGCAGTTACATCAATGCCAACTACATACGAGGTTACCTCGGAGACGAGAAAGCGTACATTGCCACACAGGGTCCAATGATCAACACAGTAAATGACTTTTGGCAGATGGCCTGGCAGGAGGACTCCCCTTTGATTGTTATGATCACTAAGCTGAAAGAAAAGAATGAGAAGTGTGTTTTGTATTGGCCTGAGAAAAGAGGAATATATGGAAAAGTGGAAGTCCTCGTCAACAGCATAAGAGACTGTGAGCACTACACTGTCCGCACCCTTACACTCAAACATGGTGGCCAGAGTCGTAAGGTGCACCACTACTGGTATACATCGTGGCCAGATCATAAAACCCCAGACAGTGCTGGGCCACTGCTACAGCTCATGACTGATGTTGAAGAAACCAGAGAGGCTTCTGGGTCTTATGGCCCGGTCATCGTTCACTGCAGTGCTGGAATTGGTCGGACAGGCTGTTTTATTGCCACAACAATAGGCTGTCGTCAACTGCGAATGGAAGGTGTTGTGGATGTTCTGAGCATCATCTGCCAGCTGAGAGCTGACAGGGGCGGAATGATTCAAACTGGAGAACAGTATGAATTTGTCCACCATGCTTTGAGTCTTTATGAGAGCCGATTATCAGCAAATACTCATCAATGAACCCAAATGGATAccaaatgaagaagaaaaagaaggtaTAGGATTTAACTCATTTTTACCAGGACGAAAAATCTTTCAAGGGTTAAAGATTTCTCTGTTTTGACAAAGACACACCCCTCAAACCAGAAGAAACTGAAATGGAGTGGCAGATGGGGATTTTGAAGGTGGATCATGAAGAACTTGTGCTGTGAAGCAAGGCTTTTAAGGTGCTGAATGATTTCTCAGTAAGCCTGATGTGTtctgtataatttttttctcagtgaACCTCTATGCCTCTAAGGACTGTTTTGTGCTGCTCTGTCCACATCACGTCACTCTACCTATATGCCCTTATTAAACCTTTACCCTGTCCGCTTCATGGCTTATGATAACAATGTTGAGATCAAGTAACTGTAGTAATTATTAAGCCTTTAATTCTAGTTTTGGACTGTGACTTGCACTTGAAGACTGTTCAATGCATTATGTTGTtgaacaatatatttcttaagtaAGCAATTATTAGTCACTATAGCGGAGCCCTTAGTTAAAAATCAGCAACAGGTTTTGACTAAAAGTTCAGTATGAGAGTTTTAATCAGAGTGAATCATCACCATTCAGTCAGGGGATGTTCagatttttctttgttaaataaATGCCAAAGCTTGTTTGTTTGAGGATATCTTCACACAAAATGCACACAATAACAGGATTATCTCACATTAAATGTCTGACTGGAGTAGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04458 PTPRR; receptor-type tyrosine-protein phosphatase R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88918 lncRNA upstream 4567 21989245 ~ 21989543 (+) True G65882
TU88910 lncRNA upstream 24033 21969509 ~ 21970077 (+) True G65874
TU88909 lncRNA upstream 31665 21959215 ~ 21962445 (+) True G65873
TU88911 lncRNA upstream 35423 21958326 ~ 21958687 (+) True G65875
TU88872 lncRNA upstream 173525 21820379 ~ 21820585 (+) True G65840
TU89044 lncRNA downstream 26753 22127389 ~ 22129328 (+) True G65993
TU89117 lncRNA downstream 177792 22278428 ~ 22278731 (+) True G66048
TU89122 lncRNA downstream 179112 22279748 ~ 22279994 (+) True G66053
TU89125 lncRNA downstream 180138 22280774 ~ 22281491 (+) True G66055
TU89127 lncRNA downstream 182798 22283434 ~ 22284072 (+) True G66056
XM_022671525.1 mRNA upstream 37832 21932769 ~ 21956278 (+) False rab21
XM_007237355.3 mRNA upstream 37832 21932777 ~ 21956278 (+) True rab21
XM_007241662.3 mRNA upstream 82533 21905259 ~ 21911577 (+) True tmem19
XM_022671519.1 mRNA upstream 277162 21715452 ~ 21716948 (+) True msgn1
XM_022671516.1 mRNA upstream 278673 21629787 ~ 21715437 (+) False gen1
XM_022671526.1 mRNA downstream 4204 22104840 ~ 22161850 (+) True LOC103042836
XM_007238167.3 mRNA downstream 80567 22181203 ~ 22243904 (+) True LOC103044887
XM_022671528.1 mRNA downstream 174005 22274641 ~ 22278022 (+) True dus4l
XM_007238165.3 mRNA downstream 174013 22274649 ~ 22278003 (+) False dus4l
XM_007238166.3 mRNA downstream 174027 22274663 ~ 22278003 (+) False dus4l
TU88777 other upstream 309276 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 969536 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 1036475 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 2199831 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2653231 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 838966 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 898734 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 1030458 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 1030458 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1343538 23444174 ~ 23444677 (+) True G66296

Expression Profile