RNA id: XM_015602657.2


Basic Information

Item Value
RNA id XM_015602657.2
length 2895
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103026270
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16615571 ~ 16651658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGTTGTAGGGACGTGTTTGCgctgcggcggcggcggcggtacttctctctctcccccagaGCTGCTGTTCGTCTCACTGGGAGGGAAAGGGCAAACAGCTGGCAGCCATAGCAACCGCGGATAAACATGAGTTACTATATCAGACCCTCCAGCTCGGCCAGCTTCACCTCCACCGCCAATGCTAGttcCTTGGATGATGACAGCAGTAGCCTTAGACAGCAAAAGCTGGAGAAGCAGAGGGCGCTGTTGGAGCAGAAGCAGCGACGGAAGAGACAGGAACCGCTGATGGTGCAGCCAAATCCAGAGGCACGCCCACGACGCTCAAGGCCACGACGCAGTGAGGAGCAAGCGCCGCTTGTAGAGTCCCGCCTGAGCATCACCAGTGATGTCATCCTTGATGCAGGTATAGATGGACCGGCTGCATTCCTGAGCTCAGAGGCTCCTGATCTGGGTACTAAGATCCAGGTGCTGTCAGCCAGCCAGCCGCAGAAGCCGTCTCCCCCTGCAGCAGAGGAACctgagagagatggagacacGGACACGTTACTGGAGCCCAAAACAGACAttcacacactgctgcagaGACGTGGACTCTCAGGCAGTATGAACTATGATGAAGTCAGTGacgatgaagatgatgatgaaacaGAAGACAGGGCTGGTTCTTTGTCTCCTAATACAGAGTCCACACGTCCAGCGTCTGCCTCCAGTACCAAGTCCAGCACGGAATGTGTGACAGTGGGATCACCCATGGCAGAGGGCCCCTCTGTCGAGGTGGAGAACCTGGAGGAGTTTGTAGTGCGGCCGGCACCACGAGGCGCTACGATAAAGTGTCGCATCACGCGGGATAAGAAAGGAATGGACCGTGGTCTTTACCCAACGTACTTCATGCACCTAGAGAGAGAGGACGGCAAGAAGCTGTTCCTGTTAGCtgggaggaagagaaaaaagagcaagACCTCAAATTACCTGATCTCAGTGGATGCCACAGACCTCTCTCGTGAGGGTGAGAGCTTTGTAGGAAAACTGAGGTCAAACATGATGGGCACTAAGTTTACAGTGTATGATAACGGAACAAATCCCACAAAAAATCCTGGAACTCTGCTTGAAGAGAGCAACACGCGGCAGGAGCTCGCTGCTATCTGTTACgAGACCAATGTTTTGGGGTTTAAAGGGCCGCGCAAAATGACTGTCATCATTCCTgggatgaatatgaactttgagCGTGTTCCAGTGCGGCCCACTAATGATCAGGAGTCTTTATTAAGTAAATGGCAGAATCGTGCTTTGGACAATCTGATTGAGTTACATAATAAAGCTCCGGTGTGGAACGACGACACTCAGTCCTACGTCCTCAACTTTCATGGGAGGGTGACGCAGGCATCGGTCAAAAACTTCCAGATTGTCCACGACAATGATCcgGACTACATTGTGATGCAGTTTGGTCGTGTGGCTGAGGACGTGTTCACGCTGGACTACAACTACCCCATGTGCGCTCTGCAGGCCTTCGCTATCGGCTTGTCCAGCTTCGACAGCAAACTGGCCTGCGAGTGACTCCAACCACCACCCCTCTTAAATTCTAGCACCTACAAACACTCCTCTATTCAGACTGTCCCGACAGGAAACTTCCTTCCTATATTTGGGCCTGAAGAGATCACCCCTCTCTGCCCTGCTCCTTCCTATCTAATCATGACATTCTCCTGCTTCACCCTTTACATCAAGAAAATCCAAACCAGCACAAAAGACTGAGACCATCTACTAAAACCATAAAGAAGATACAGGAAGTTTATTCTGTAAAGATTTATTTCTTGttacaaaaataaagagaaagggGCATATCTTATAAGGGAATTCCATCACATCATCTTTTATCTATTTGCTATTTCTGTTTTGTTGACTTACAGTTTTGTGTAGTGACCTTGGTTTCTTTCCATCGCGTTGAAACTTACGCTATGACTGAGCATTTGTAAAGAGGAAGTGACCTTTCTATTGATCATTTCAGTTGGACAATGAGGGACAAGGAGcttaaatatactaacagacaAAGGGACACGTACAATGGTATTCAtgctttgtttttattacattttgattGGTGTTGTATATTTGTTGagttacatttgtttttaaatgtacttttctatagctgtttttttgtcttgatGGATATTTTTACAGTGTCATTTGTGGATTTGCAGGTTTTGTGTTGTCGTTTTTAAAACATGTAGCAGTGCTGAAACCTTTTCCTTCCTCTGCAAACCTAAAGATGACTGACagctatttcatttttatttaccaCGTTGAGGAGAGTGAAGCTGGTAGTGAAGCTTCACGTCCTTTAACATGACCCCGAAAGACCACCACCACTACATTCAAAAGAGCTAAATGACTGTTGCTGTTTCTTCCATTGGCCTTCCATTCCATAGCCTgctagttttgtttttattactcgtgatattctaattatttatttactttcctCAAATAAGTGAAATTGTGAAATGATGACCCGTTATATTGCCGAGTGAAATTTGTGATTTATCctgtaaatgtttgtgtgtggccttgctattttttttattggtaaaaCACAGTGCAATGATGCTTCCCTTGTGAAAtggaaacacaaaaaatattttggtaATAATGGCTAGTGAGTCTTAAAAATTGCCTTAATATGTTACAGTTGTGTGAAGAGAGCCTGGATGCGGTATCGGTGACACGCGAGTCGACGTCATTGGGAACTAAAGCACATTTCTCCCTGTTCGTTAAGTGAACACTCTCCTGTAATCCTGACTTGCGTGTGAATTCTGCatcatgtactgtatgtgattAACAAGCCAATAGTTTACTGGAAATAAAAGGAAAGCCTATTTTTTCCACTGGAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86895 lncRNA upstream 6358 16608857 ~ 16609213 (+) True G64393
TU86853 lncRNA upstream 82788 16491186 ~ 16532783 (+) True G64362
TU86766 lncRNA upstream 183159 16377660 ~ 16432412 (+) True G64291
TU86767 lncRNA upstream 247177 16360903 ~ 16368394 (+) True G64292
TU86750 lncRNA upstream 448193 16167064 ~ 16167378 (+) True G64279
TU86909 lncRNA downstream 44282 16695940 ~ 16707096 (+) False G64403
TU86910 lncRNA downstream 49455 16701113 ~ 16707096 (+) True G64403
TU86941 lncRNA downstream 75374 16727032 ~ 16782114 (+) True G64427
TU86987 lncRNA downstream 245892 16897550 ~ 16904677 (+) True G64462
TU87054 lncRNA downstream 300923 16952581 ~ 16952839 (+) True G64509
XM_015602656.2 mRNA upstream 188948 16395326 ~ 16426623 (+) False arid2
XM_007237948.3 mRNA upstream 188948 16395327 ~ 16426623 (+) True arid2
XM_007237950.3 mRNA upstream 188948 16395327 ~ 16426623 (+) False arid2
XM_007237949.3 mRNA upstream 188948 16395328 ~ 16426623 (+) False arid2
XM_015604721.2 mRNA upstream 300572 16218828 ~ 16314999 (+) True LOC103047366
XM_022671406.1 mRNA downstream 65394 16717052 ~ 16764567 (+) True LOC103042039
XM_007241775.3 mRNA downstream 116752 16768410 ~ 16779685 (+) True LOC103041732
XM_022671408.1 mRNA downstream 132255 16783913 ~ 16811230 (+) True LOC103035087
XM_022671407.1 mRNA downstream 132448 16784106 ~ 16811230 (+) False LOC103035087
XM_022671409.1 mRNA downstream 181632 16833290 ~ 16882939 (+) False LOC103030423
TU86763 other upstream 173122 16439220 ~ 16442449 (+) True G64289
TU86778 other upstream 188958 16422234 ~ 16426613 (+) False arid2
TU86374 other upstream 1870489 14744735 ~ 14745082 (+) True G64015
TU85654 other upstream 3454251 13156226 ~ 13161320 (+) False LOC111192955
trnag-gcc_1 other upstream 3956053 12659448 ~ 12659518 (+) True trnag-gcc_1
TU86945 other downstream 101385 16753043 ~ 16753560 (+) True G64431
TU86961 other downstream 181638 16833296 ~ 16864454 (+) False LOC103030423
TU86972 other downstream 212860 16864518 ~ 16888195 (+) True LOC103030423
TU86974 other downstream 221429 16873087 ~ 16875941 (+) True G64449
TU87328 other downstream 1038551 17690209 ~ 17719428 (+) False G64698

Expression Profile