RNA id: XM_022671404.1


Basic Information

Item Value
RNA id XM_022671404.1
length 5196
RNA type mRNA
GC content 0.43
exon number 16
gene id LOC103027662
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16529205 ~ 16577816 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCATCTGCGTGCAGACAGCAGCGTTTCCCTGCATTGTCCTGAGAAGAAGGTACTGTCCTGCACTATCCTGCCAGTTTAGTCTTCCATCAGTTTAAGCACCATGGACCGTATGGAGCTGAAGCCTGTGAGTACTGAGGCAGATGATGAGAGCATGGACGAGCGCTACCCCACTCCCATCGAGGAGAAGACCCCCATGAGCAGCCAGTATATGGATGAAGCAGATGATGCAGAGAGCCAGAAGTTCCTTGCAAATGgaattaaaaagaagaaatttgAGGAGTATCATGAAGAATACcacCCAGGTCATGCCTCGTTTGGGATGTCTGTTTTTAACCTCAGTAACGCCATCATGGGAAGCGGAATCCTGGGCCTGTCTTTTGCCATGGCCAACACGGGCATTGTGCTCTTTGTGATTCTCCTCCTGGCTGTGGCTATTCTCTCTCTGTACTCTATTCATCTGCTACTGGTGACAGCTAAAGAAGGAGGTTCTCTCATCTATGAGAAACTGGGTGAAAGGGCATTTGGCTGGCCGGGGAAAATGGCAGCATTTGGATCCATCATTATGCAGAATATAGGAGCTATGTCCAGCTACCTGTTCATAGTGAAATACGAGCTTCCTGAGGTCATCCGAGCCTTCATGGGAATAGAGGAGAGCAgtggTGAGTGGTATCTGAATGGTAACTACCTCGTGGTGTTTGTTTCCTTTGGAATTATCCTGCCCCTGTCCCTGCTCAAAAACCTTGGCTATCTGGGATACACTAGTGGGTTCTCTCTTTCGTGTATGGTCTTCTTCCTGGGGGTGtTGATTTATAAAAAGACTCAGCTGCCCTGTCCGCTGCCGTTCTTCTTTAACCACTCTTCTAGTTTGAGTCTGAATGGTTCGGAGTTGTTAGGACCGTACGCTCTCCACAACAGCTCAGCACTGATGGAGTTTTCACGGGCTGATGCACATGTGGACCCTCACTCACCTACTGTGGCCCACAGTGGGGTCCACTTTACCCCCAACCCAGAAGACTATGAGGATATGTGCACACCCAAATACTTTGTGTTCAACTCCCAGACCGCATACACTGTTCCTATTCTGGCCTTTGCTTTTGTGTGTCACCCTGAAGTCCTTCCCATCTACAGTGAGCTGAAAGATCGCAGTCGAAGGAAGATGCAGACTGTATCGAACCTCTCCATCCTGGCTATGCTTGTAATGTACATGCTGTCGGCTCTGTTCGGCTACCTCACATTTTATGGTAATGTGGAGGCTGAGTTGCTACACACTTTCACTAAGGTGTATAAGTTTGACACCATGCTGCTGCTTGTGCGTCTGGCTGTGCTGACCGCCGTAACGCTGACCGTTCCCATCGTCCTCTTCCCTATTCGCTCGTCCATCGTCACGCTGCTGTTTGCTGGCCGAGAGTTCAGCTGGATCAGACACATCCTGATCGCCTTCGGCATCTTAATATTCAACAATTTACTCGTCATCTTTGTCCCAACCATCAGAGACATCTTTGGCTTCATAGgCTCATCTGCTGCCACCATGCTGATCTTCATCCTACCTGCTGCCTTCTACCTGCGGCTGGTCAAGAGCATACCGTTCAAATCCACCCAGAAGATATCAGCTCTCGTCTTCCTGGTGGTGGGCATCATCTTCATGATTGGCAGCCTGTCCCTCATCATCCTCGACTGGATCCACAACCCCTCTGGGTCTGGAGGCGGCCACTAAACAGCAGGCGGCCCACCCCAACCTCCCCAAAGAGACACAGACTAGTGTTACTATGAGCCATGTGACCGTCCGTCACAGCGTACACCCTTCACACACAGTATTACAAGCGGATGTTCAgccgtctctctttctctctctgtgtcctcTGTGTCATCATCATCCTcgtcaccaccaccaccaccaccaccgcaCATCCTCTGAGCGTGTGTTCTGTAGTTGTTTTGTAATGTTATGTACTGAGAAAGCTGAACCGTAGTGAATGTAGTTGTGAAACTCTGGCTGTGACACGGGGAGGCCGAACTGCTCGCGCTCCATGCGTCGCTCCAccaatggcctctgtgtcaacAGCCTGGCTTCAAGTGATGTCACCGAGAGCTCctcggagagagaaagagagagagagagaaagggagatgaACAGATGACGAGACTGACCTAACTGCCTCAGACAGACGATGTGTCTCTGAGAAAAAGAAGGCCACCTCGATGCTTCAGGAGGTTGTGGGGATTTGGTCTATGTACAAAAAGCACTTCTAGATTTTTAATGTATGTTCACGCACTGGCGCATCCATACAAACATGCAAACTAACTAGGTTTTGTTTCACTGGCATCAGTCGTTTCTTGTCTTCCCAGGAGAGcgttttttaattcagttaaattGTCAAATCCATGGCATTTTATTTCGTTATTGAACTGTAGCTAGAACTTTCTGCCGAAGATCAAATGGCATCGCTTTTATTCTAAGGGTTTTGACATCGTGAAATCTTTGCTTTGTGAAGGAAATGGTCCAATATTTAGATTATTTCactcaaaaacaaaagaatcaTCTCAAATCATCACTGAAAAACTTGATACAAGAGTCGTGTCCATAGCTCTGTTGCATTATTTACATGCTGGTGTTGTGTAGCTGCTGAGCTTGGACtctgtttattgtgtgttgtcATTTGCTTGCATTGCGTTTACTCGTCAAGTCACAAGCTGACAAACTCAATGCAAGGTAGTGTGAAGATATGAAAGAATTTCACCTGTCAGTGCAGAGTGTGACCGCTAAATATCCTGCTCCGTTCTGACTCTGGTGCTGTCTATCTGACcccgggagagagagagagagagagagaggaacgaGAACGAGACAGCTGGTGCTGATCGTATCAGTTTTAGGTGAAATCTGAGCACTCGGAACCAGAAGAGCTTCACAGCATTCATCATTAGGCACAGAAGGTCATGTAGCAGTGGAGCTCTACTGAACTGTGCTCAAAGCCTTTTACTGTTCTTCAGAGTGTTCTATCGTACTGTACAGTTGTTGGAATGACGGAATGATTTACTGCCCACGAAGTAGCTCGTTTAGTGATGTTCCATCAGTCAGTGTAGCTAATCTCGCCCAGGCCACGTTCTACATTCAgtttagctgaaataacaatgaTAGTTAATCATTTCTGTTGAGTAGTTTGCCCTTTTTGCATGGCATGATGATAATGCttgtctttctgttttctccttttactttgttttctttttgttcgcGACTAGCTGTATCGCTCTGCCAGTTGATTCCTTTGACTCCTTTGCCCTGTGTTGGAGAGCAGTTGTCTACTTGTTTGGGTGCAGAGACCATCATGCCACAAGCATAGCTGTTGAAGCCAAACACTGCAGGTTTCACTCTTGAGCGCGTTTCGTTCCGATCCAGCCAAAGTGGACAATATTTATAGATCCTTTGTTGGTCTACGTGGACATAAACAAATGAATATTTCAAATGAAATGGTATATTTTGTGCATGTCTTGGATCACAAACATGGTCAATTTTTGGACAATTGTATATTCTTTGTAAATAATCTGCTATAAGGTACACTTAGTTAAAGGGTGGGATGGGATAGGATCTCAAAAGTTTACCAATACAGTTTTTAGTATTATGTATTTTAGATCATGGTGTTTGTTAATGTCATCTAACTTACTTCCTCCCCTTCTTCCCTTTATTTCTTCCTCCCCTTCTTcctccctttatttttttctttctttcttccttccttttttGAGCTTGCTTTGTAAatttgtgaaaaacatttttgtatttctatTGTTACTTGACCTCCTCGGCTATTTTTATGAATgaaaaactgaagtgttttttatgttactTGAGTACTTGTCAGCTGATGATGGTACATATCAGTCACAGAAGCGTAGACGTCTGTATGGCACAATGCCGTTTTATGTGCATGTTTTAAAGGAATCATCcagcatttagtttttttgtaaatgatttttgtgtagtttttaaaGAACATCATGTTTCTGAAGTTAAGAAGGCACAGAAATGGCTCTCTGTAGTCTTCCGAAgcccaaaaaataataatcacccTTCACTCCCACAAAAGTTTTACAACCATTTCATGAACCCCTGTGGTTGATCCCTATGGGgcttaataaaacataatataacaaaTGGGAAATAATTTCCAATAGTTCTTACACAAAGATTAATAACTGAATTATGAATATAGGGTTGAAGGGTTTACCCTCTTGTGCTGTGACCTCTGATGCTATAATTCTATTTCTTCCAGTAGTTCTGTGACTTCTGTTCACTCGAAGAACTGAAGTTGTTATTTAgtgaaaacatgcaaaaaatgcaAACTGGCTAGCACTTTTattgaaataatgcaaagaaaatagtGAATTTAGATGATTAAACCTTTCTACATCAGTCCAAACCTGAAACACCACTACAGATCAGCTTCTGGCTTCTGTGCAAATAAAACATCACTGAGTGAAATAATCCACAATTtgtttatgttacatttctgaTGTAATTCTTACTACATAACCATTTATTTCATTGTGTTGGAGAATATACAAACTATACAGTTTGTTTTACCACTGGAAGCCTGTGAGACATTTTGTGCCAACATTTAATAAAGCCgccaaaatcatttaaaaatgtaagaaaaatgcTGGACGGCTGCTTTAAACTCAGAATCCAGGTGTTTTGTCTTGGCCGTCTGTTTGAAGTCAGACATGTTTTGCACACCTGTGAGCTCAGTGTCTTATATCAATGTCATGCTGGATGGGCTTCGGCTCTGTGCCTTGACTTTCCCTCAGGTATTTAATAAACGGAGTCCAGCTGAATTTGTAGAGGGTCACGACGGTGTTCCCCCATACCTCATTCACATTCTcagaattatttattactgtaCGTTACTAACTTCTGCTtaacttttaaagctctaataATGACACAGAAACTCAAAGCCGTCAGACCCTCTGCAGATGAAGCTCGAATCGTCTCTAAACGTTCTACCTGAGTGCCATCAAACCCACAAGAAGCGCTGGCACACTGTTAGCCAACCAGCGACAACCAGTGTCTTCCTCCTGTGGATCAACTAAGTGTGATTTGTATATTTGCCAGGTTAAAAGGGGTTTTTTGTATCAGTGAAGCTGTTTCAATATTAtgtaacgtaaaaataaaactgatgaGAAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86879 lncRNA downstream 14337 16508936 ~ 16514868 (-) True G64382
TU86877 lncRNA downstream 39274 16489509 ~ 16489931 (-) True G64380
TU86807 lncRNA downstream 160815 16360895 ~ 16368390 (-) True G64321
TU86809 lncRNA downstream 167998 16312131 ~ 16361207 (-) False G64321
TU86806 lncRNA downstream 235237 16293718 ~ 16293968 (-) True G64320
TU86926 lncRNA upstream 83436 16646178 ~ 16648622 (-) True G64418
TU86933 lncRNA upstream 102279 16665021 ~ 16666355 (-) False G64422
TU86934 lncRNA upstream 102279 16665021 ~ 16667239 (-) True G64422
TU86935 lncRNA upstream 102279 16665021 ~ 16667239 (-) False G64422
XR_002650193.1 lncRNA upstream 149331 16712073 ~ 16714042 (-) True LOC111192962
XM_007237947.3 mRNA downstream 59848 16459740 ~ 16469357 (-) False slc38a2
XM_007237946.3 mRNA downstream 59848 16459740 ~ 16469357 (-) True slc38a2
XM_022671403.1 mRNA downstream 78439 16431300 ~ 16450766 (-) False scaf11
XM_007237943.3 mRNA upstream 91371 16654113 ~ 16660507 (-) True LOC103027149
XM_022671153.1 mRNA upstream 133339 16696081 ~ 16707075 (-) True LOC111192875
XM_022671410.1 mRNA upstream 332838 16895580 ~ 16945665 (-) True LOC103039070
XM_022671411.1 mRNA upstream 332838 16895580 ~ 16945445 (-) False LOC103039070
XM_022671416.1 mRNA upstream 482772 17045514 ~ 17079220 (-) False LOC103042974
TU86473 other downstream 1534373 14994164 ~ 14994832 (-) True G64060
TU86395 other downstream 1743056 14785321 ~ 14786149 (-) True G64034
TU85708 other downstream 4163466 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 6117974 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 6906417 9618661 ~ 9622788 (-) True G63104
TU86884 other upstream 22323 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 319593 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 319593 16882335 ~ 16887903 (-) True G64492
TU87035 other upstream 319593 16882335 ~ 16887903 (-) False G64492
TU87037 other upstream 320589 16883331 ~ 16887903 (-) False G64492

Expression Profile