RNA id: XM_022671403.1


Basic Information

Item Value
RNA id XM_022671403.1
length 5280
RNA type mRNA
GC content 0.50
exon number 16
gene id scaf11
representative False

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 16431300 ~ 16450766 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGCTACAGCTACCTGACCCACATGTGGCTGTAGGAAGGTTTTAAACCCGGAGCCGCTGACCGCTCTGTCCCGCGCGCTGAGGTGGACGCTGGTCCGGTGTAGCGGGTTGTATGCTGCTGTAACGGAGCCGGGCCGCTGCTGGAGCTGCACGGTGACCGGCGGGTCCTGAGGCGGAGGAGAGCTACCGAGAGCAAACTGAGCCTGGGAGCAGCTAACACACTGAGCCAAAGATGCCCACAGGATCCAAAAATGGTGTGCAGGGCGTAGACAATGGGTCAGAAGATGAGGAAAACCAGCGCTGTCCTATTTGTCTGAACACCCCCAGCCCTTCAGAGCGAGCTGTGCCTGATGGCTGCAGCCACTTCTACTGTTTTAACTGCATCCTGCGCTGGGCCCAGATGGTGCAAGTCTGCCCAGTGGACCGGAGGCCATTTAGCGCAATCTGCAAGCAGAACCCTTTGCTGGGTTACATCAAGATTCCTGTGAACACACCAAGCAAAGTAAACACTGATGTATGCAACAACAAAGAAACAGTGAAGGCGTTCTTAAAGGAGGAGACAACAGAAACAGATGTAAATTACCGGAAAAGACCCCTTCCTGAACTGAAATGTCAAAGACGTGAAACTGATTGTTTGGcccagaagaagaaaaagGTGAGAAGAGAAACATGCCGCTCACAGCTGCTTTCTTCACAAACTCAGCCTGGGCTGTCAGTCCAGCAGGGGGAGACACTCGGCATGCTGACCCACGTTGTCACAGAGTCTGTAGATCCTGAGGAGGAACCAGTAGATGAGGAATGGAGACAGTGTCGGAGAAATGTGGCGGAAAACCAGTGGTTGCCTTCATCTACACACATGACAACAAGCATTCTTTCCAGACGCTGTCCTCGTGCTCCTGTTCTTCCTCAGACACCCCAGTTTACACAGTCACTCTCACCATGTCCACTGAGATCTGGATTTTCTGTTCTTTATGGAAAGGCTTGTGCGGTAACGTGCCCCAAAGGTGAGGGTAGAAAGAGCACCCGAGGGTCTGCATCCAAAAACTCTGTGAGTCAAGAACAGAACGTTACATCTCGCCGCTCTTCCAGGCGTAGAAAAAGTGGGAATGAGGAACCAGTATCCACTAAGCCTCAGCATTTGGACTCTGACTCTTCCTCGCCTGCTGGCAGTGCATCAAGTGACATGCGTGCTTCTACAAGCAAAGGAAGGCAGGCTGGGAAGCAGAAACCTGGTAACAGAAGGAAAGGGGGTGCAAAAAAGAAGACTGCCCGAAAGTCATTGGTGGAAAGTGAAGATGAGGGCAATGAGGAAGAACCAGAAGCTGGACAGGGGAGTCAGGAAGAACTGGGAATTGATATGGAGGAGTCAACACAGGAATTGAGGACAGATGGGGAGGCAAAAGAAGAGAGGGAAACAGATGAAGAGGCTAAAGAAAATCACAACACAGATGATGACACAGATGATGAGACAAATGCAGATCAGGGGACACATGATGCAAAAGCTGATGAGGGGACAGATGAAGAGGCAAAGGAAGATCAGGGGACAGATGAGGAGGCAAAGGAAGATCAGGGGACAGATGATGAGGTAAACGCTGATCATGGGACAGATGATGAGGCCAACGAAGATCAGAGAACAGATGAAGACGCAAAATCTGATCATGGGACAGATGAGGAGGCACATGCAGATCTGGAGTCTGAGGAGGGGGAAAAAGTAGATACAGAGTCTGATGAGGAGGCACATGCAGATCCAGATGAGGAGGCACATGCAGATCCGGAGTCTGATGAGGAGGAAAAAGCAGATCAGAGTCCATATCAAAAAGATGTAGGTGTTGATATGGATGCAAGTTTAAGTTCTGTAGATTCTGATGGAAGTGCACCTAAAATGGACACTGAAGAGTGTGAACAAGCTTCCCCTCTCAGTGAAAAACAGCAAGATGAAGAAATGGAGGAAGATGACACACTCAAGACAGAGGACAATCAGGCTTGTTTTCAAGAGAGGTTGGATTCTTCTGATGATGATGAATCTGAGGAAGAGCCAGCAGCGCCTGAGGGAGAACAGTCTattgaaaagaaaaagcaaCTGTCTCCTCCCTGTGCAGAGCAGGTAAAAGTAGAGGGTACTACTGACACCTCTGCCATTTCAACTGTCCAACCTCAGGATACTGCAGCAGAGATCTCTTTAGACAAGACAACTGATGATGACAGAATAACAGAATCTGAAACTCCAGTTGAGGCTGATGAGTGTAAAAGTGAAACAAGTGAAGTCTCCAAGCCACCTGTGTCTAACAGCAGCTCACCTCAACATACAAGTGAAAACTCTTTGCCAAAAGACTCTGATGACCTTGCTGTGAATCTGGGGACAAAGCCAGATGAATCCCTGGGTGCCAGTGGTCATCAGGATAACACTGAATCCATTCCTATGGATTGTGACTCACCTGGCTCAGATGATGCTTCTCTTCCTTTTGAGACAGTCTCTGAGAATAATAGTGCTGTTCCTGCACCAGAGATCTCTTCTGTTAATCAGATCCCCAGTCAGGAGGGAGAGCAGAAGAGCAAGGAGCAGGAGCCTAGCTCTGACTCTTCAAAAGACCAGAGATCCTCGGACAGGAGAGAAAGAAGCCACCGAAAGTCTCGTTTCCACTCACCCACAACCACCTGGTCCCCTAAGAGGGAATCAAGAGGGGAGGGATCAAGAAGATCCCGGTCAAGGGATCGAGATCGTGACCGGGATCGAGATCGTGATCGCAGTCGTAATGCTGGGTCACCGTCCAGGGGTCGAGGCCGTGATCATGAAGAGGAGCGCGGCAGCTCCAGGCGGAACCGCAGTAGAGACAGACGAAGCAGGAGGCGTTCTCGCAGTCGTTCTAGAAGCCGCTCGAGGTCACGCTCGAGATCAAGGAACAGGCAGAACCGAAGAAGTCCTTCTCCAGAACGTAATGATCAAGGAGGGCAGTCGCCACGAAAGAGAGACTCTTGGGGAGGCGAAAGCTGGCGAGGTGCACGCAACGCCCGCAACTCTAGCTGGAGGAACAATCCAGAGAGACAGAATCACTTTTCATCAAGAGAGGGTTTCAACTCTTCAGGCAATGGCAGCTTTCATGAAACATCACCAGACAGAGGTCAGTCAGATGTTCCATCCTGGGTGAAGGAAAGGTCGTGGGGAGCTGGTGATGGCAGGCAGCGTGAACAGGAGAATTTTGATGACGCTCCTGCAGACTCTTGGCCTCGTGGTGGCTGGGGTTCTGAACGCGGCCGTGGTGGAGGTGGTCGTGGTCGGGGTGGGCAGCAGCGGCCCTTTGGTATGCAAGGGGAGCCTGGAGCAGATAACTGGCGGCAGCAGCGTAACTCTTTCTCAGGGACGACAAATAACGCAGGGAGTGACTCCTATAGTCGCTTCAATGAGAACAGACCTGGAGGAAAGAGGAAAGAGTCAGACTCCTCCGATACACCCTTGGATCGGTCTGGATGGTCTTCTGCTTCCAGCTGGGCAGTACGGCGAACCCTCCCTGCTGATGTACAGAGCTACTACTCGCGAAGAGAACGAGGTCCTGGGACAGGTGGGAGCATCTGGAACAAACAAGAAGACGAACAGCCTGCAGCCGGTTTCTCCAAACAAACAGACCTTCCACAGAGTGAGCCAAGTACCCATCTACCTAATGAAGCAGTACCAGCCCCACCTGCTGTTGTACCCCAGCCGCTCAATGTCCTAGGGGTTCTGCGCTACCCTCTAGGGCCTATGGTACCCAGAGCCCCTTCTGTCGGCCCCCAGCCTGCTTTGTTTACCATGCCACCACAGATACCAGTACACATGCATCCTCAAGGCCCTCCTCTCCCTTTGCCCACCATGGCTGTGCAGGGTCTGCCACCAccccctccaccacctccacctgtACAGCAAGGCAGCATCACAGTCCTTCCAGCTGACAACCTCCCTCAGGTCATTACAAGCTTCCCTATGCCAGCAAAGCCCCCTCTGAAAGTGATACCAAACAAGGCAGTGCCACTGCAAGTTCACCCTACCAGCACTCCCAGTGTAGCCCAGCCGTCATCCACTACACAGCCCCCTTCTCACAGCAAAGCCCATGCAGACAGCTCCAAGAAAGAGAAGAAGTTACAGATTCAGGAACGAGCAGTCAGTGAGGTGAAGGCAGCCATCAAGCCATACTATCAGAAGAAGGACATCACCAAGGATGAGTACAAGGAGATTGTACGCAAAGCTGTGGAAAAAgtCTGCCACAGCAAGAGTGGAGAAGTTAACGCTGATAAGGTGGCCAACCTCGTCAAAGCATACGTTGACAAATACAAGCACGCTCGCAAGAACAAAACGGACAAAATCTGAGGGAAACTGAGTTCTGCCGCCCGCACAAGTGCAATTTCTCCAAATGTGGCCTGGGTCCCACAGGCTGAGGTGACTGGAGCTTCTTTtcatatttgcagaaaataataaagatttTCTATAGATtgcatattttgtttaatttggaTTTCTTATAGTGCATCGGCCCtttaattgcttttttctttGGGGGGAATTCTGGGGGAGGGACTGCTGTAAACATGAGCAGATGTGTACTTGAGGGGTAGAACGGGGATCACTCTTTCTCTTAAGATCTCTAGCCGTGTTTGATTACATTGCAATCTGTGGAGTAGCTGTAAGTGGTTAATCAAATCAACAGAGTGGTATgcattctctcttttcttcttcctctctctctctctctctctcactctctgtttttGTCCCATGGACCTTAATGAATTAACGacttcattttccttttttatgcaTCAGAATGTTGTCCTGAATAAATGTGCATTGACTGTTTTTCCTGTCCGTGTGGCTGGATGAGCTGGATCTGTGCGTATGTGAATAATGAACTTTAGTTGTAGGGAGGATGTGGACAGCTTGTCAGTGAAACTGAGATTCTGATATTGACCTATGGAGTAACTGCTGTACTGCACAaccaatgtatttatttacctcCCAGAGCAATGTAATAAACAAGCTGTCTTTTACCCTTCTTCATTTCGACCAGCTTTCCCCCCCTCCAGTTGTTTTTAGGTGCACAGGACAAAGTAATGTTTTTAGTATGTTTCAGTTTGTTTAGAGCTTCTGTTCAGGTATAATGAGGATGACCGTCTGCTATGTCTGCCAGAAATGTATAAACTGTACAATCATGAATACGTGTTAGTGTTTATTATGTACTGTTTAGCACTGTCCCAAGAAAATGTAGGGATTGAACTTTTCCTTGCaagaataaaatacatattttgaacATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86807 lncRNA downstream 62910 16360895 ~ 16368390 (-) True G64321
TU86809 lncRNA downstream 70093 16312131 ~ 16361207 (-) False G64321
TU86806 lncRNA downstream 137332 16293718 ~ 16293968 (-) True G64320
TU86793 lncRNA downstream 250846 16176513 ~ 16180454 (-) True G64313
TU86751 lncRNA downstream 263927 16167063 ~ 16167373 (-) True G64280
TU86877 lncRNA upstream 38743 16489509 ~ 16489931 (-) True G64380
TU86879 lncRNA upstream 58170 16508936 ~ 16514868 (-) True G64382
TU86926 lncRNA upstream 195412 16646178 ~ 16648622 (-) True G64418
TU86933 lncRNA upstream 214255 16665021 ~ 16666355 (-) False G64422
TU86934 lncRNA upstream 214255 16665021 ~ 16667239 (-) True G64422
XM_022671401.1 mRNA downstream 79587 16347559 ~ 16351713 (-) True LOC111192960
XM_022671400.1 mRNA downstream 80101 16347559 ~ 16351199 (-) False LOC111192960
XM_015604747.2 mRNA downstream 504029 15925546 ~ 15927271 (-) True akap14
XM_022671393.1 mRNA downstream 563505 15671306 ~ 15867795 (-) True LOC103027187
XM_022671392.1 mRNA downstream 806952 15578874 ~ 15624348 (-) False LOC103045938
XM_007237947.3 mRNA upstream 8974 16459740 ~ 16469357 (-) False slc38a2
XM_007237946.3 mRNA upstream 8974 16459740 ~ 16469357 (-) True slc38a2
XM_007237945.3 mRNA upstream 78439 16529205 ~ 16577816 (-) False LOC103027662
XM_022671404.1 mRNA upstream 78439 16529205 ~ 16562742 (-) False LOC103027662
XM_007237944.3 mRNA upstream 78439 16529205 ~ 16561815 (-) True LOC103027662
TU86473 other downstream 1436468 14994164 ~ 14994832 (-) True G64060
TU86395 other downstream 1645151 14785321 ~ 14786149 (-) True G64034
TU85708 other downstream 4065561 12320555 ~ 12365739 (-) True G63516
TU85294 other downstream 6020069 10314799 ~ 10411231 (-) False G63217
TU85152 other downstream 6808512 9618661 ~ 9622788 (-) True G63104
TU86884 other upstream 134299 16585065 ~ 16585647 (-) True G64387
TU87029 other upstream 431569 16882335 ~ 16887903 (-) False G64492
TU87032 other upstream 431569 16882335 ~ 16887903 (-) True G64492
TU87035 other upstream 431569 16882335 ~ 16887903 (-) False G64492
TU87037 other upstream 432565 16883331 ~ 16887903 (-) False G64492

Expression Profile