RNA id: XM_007238164.3


Basic Information

Item Value
RNA id XM_007238164.3
length 1531
RNA type mRNA
GC content 0.41
exon number 8
gene id bcap29
representative True

Chromosome Information

Item Value
chromosome id NC_035903.1
NCBI id CM008306.1
chromosome length 40813162
location 22284747 ~ 22297679 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCGGCACAACACCGGTCCGTGTAGTTGAGACAGCGCAGTGACGTCAGGACTGTGAGACGGTAGAGGCAGAAGTTGTAAAGTTTTCCAGATTTCGCTCTGACCGCGCTGATGTGAAGCTGAGCCGCAGACAGGTGAGTACAGGGACTTCTGCTGCTGTCACAGTAGAACAGGCCGCTGCGGGGCGGGAATCCGCTGCTAGAACAGCCAACCTACCCACCTCAGCTCTCTCAGTCCACAGCAGGCATTCTGCAGGCTTAAAATGACTTTGCAGTGGACTGCAGTTGCTTCATTCCTCTATGCTGAAATTGGAATCCTTGTCTTCCTCTGTCTGCCGTTCATCTCAGCTAAAAGATGGCAATCTATATTCAAACTGAACATGTGGAGCAGCATTGCTCGATTCTGGAACAAGGGATTCCTGGCAATGATAATCatccttattgttctttttctggaTGCTGTAAGGGAGGTTAGAAAATACTCTGGAGCTGAACCCAGCAAAGAAGCCAAAATGACACCTAACATGGTTGACCACTTGCATATGAAGCTTTTCAGAGCCCAGAGGAATCTCTATATCTCTGGCTTCTCCCTCTTCTTGTGGCTGGTCTTGCGCCGGGTGATCATGCTGATAAATCAGCTGGCAGAGGTTACAGACACCAGCAAAGCTCTTCATGCCCAGACAGAGGCAGCTAACCTGGCTGCCAAAAAGTACATGGAGGACATTGAATTGCTCAAGCagGCTTTGGTAGATGGCACAGAAGAGGAAAAGAGTGGACAAAAGAATGAACTTCTTAGAAAAGAGGTGCAGAAACTAACAGATGAGTTGAAGACATCTACTGAAGCCCTGCAGAAGTCCAGATCAGAAGTAGATGTCCTTAAGAAGCAGACAGAAGACCTGGCCAAAGAATATGACCGTTTACTCCAGGACCACCAGCAACTACTGAATCAAAGTGAAGATAAGAAAGATATGTAAGCAAACCACTCATCAGCTTCGAACAGCTCTAGACAGCATGGCTCCACCCTATTCACACTTGGATTCACCACATAGCAATACACACAGTAATTTGGACATATTCTATTTGTACTGTTTCAATGATAATTTAGTAAAAGATCAGAGACTTGACCAGTTTGAGACGTTTAAATATATGAATGAATGTGGTTGGATATTATTAAGTTTACACTATCTACATGTTGTTAAGTTTAGAAATGTTAATAACATTAAGTTGaattttaatatacagtgattTAATATAGTcacttgttttaaaatattttgtttttaaagcaaaGCAGTGTTGTTCTCTAGACATGCAAAAGTCTTCCTTATTTTGACAGAGTTTACTAGATAATAACATGTATTGTTATTAACTAGTCAAAAAATATGCTGGATAAGATTTGATTTGttatgcatttataagtgaATGTCACTTTCATACACGTTGGTTTCATCagctttttgttcttttttaaatgagCAGTGATTGTACTTGTGCCAAAGTGAAATTAAACCAAATGGATTTTGTTCACTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89127 lncRNA upstream 675 22283434 ~ 22284072 (+) True G66056
TU89125 lncRNA upstream 3256 22280774 ~ 22281491 (+) True G66055
TU89122 lncRNA upstream 4753 22279748 ~ 22279994 (+) True G66053
TU89117 lncRNA upstream 6016 22278428 ~ 22278731 (+) True G66048
TU89044 lncRNA upstream 155419 22127389 ~ 22129328 (+) True G65993
TU89135 lncRNA downstream 21164 22318843 ~ 22319548 (+) True G66062
TU89215 lncRNA downstream 656598 22954277 ~ 22955434 (+) True G66140
TU89219 lncRNA downstream 660762 22958441 ~ 22962842 (+) True G66144
TU89218 lncRNA downstream 666192 22963871 ~ 22969303 (+) True G66143
TU89293 lncRNA downstream 810207 23107886 ~ 23204707 (+) True G66183
XM_022671528.1 mRNA upstream 6725 22274641 ~ 22278022 (+) True dus4l
XM_007238165.3 mRNA upstream 6744 22274649 ~ 22278003 (+) False dus4l
XM_007238166.3 mRNA upstream 6744 22274663 ~ 22278003 (+) False dus4l
XM_007238167.3 mRNA upstream 40843 22181203 ~ 22243904 (+) True LOC103044887
XM_022671526.1 mRNA upstream 122897 22104840 ~ 22161850 (+) True LOC103042836
XM_022671534.1 mRNA downstream 641876 22939555 ~ 22949199 (+) True ccdc167
XM_022671533.1 mRNA downstream 641882 22939561 ~ 22949199 (+) False ccdc167
XM_007256034.3 mRNA downstream 702323 23000002 ~ 23003468 (+) False c7h11orf98
XM_015607538.2 mRNA downstream 707076 23004755 ~ 23012773 (+) False LOC103025638
XM_007256033.3 mRNA downstream 709254 23006933 ~ 23012773 (+) False LOC103025638
TU88777 other upstream 599913 21629862 ~ 21684834 (+) False gen1
TU88525 other upstream 1260173 21024175 ~ 21024574 (+) True G65575
TU88511 other upstream 1327112 20957135 ~ 20957635 (+) True G65565
XR_002650196.1 other upstream 2490468 19780663 ~ 19794279 (+) False LOC103037311
TU87956 other upstream 2943868 19280300 ~ 19340879 (+) True alyref
TU89211 other downstream 641923 22939602 ~ 22949192 (+) False ccdc167
TU89229 other downstream 701691 22999370 ~ 23003421 (+) True c7h11orf98
TU89299 other downstream 833415 23131094 ~ 23137954 (+) False crebl2
TU89300 other downstream 833415 23131094 ~ 23137954 (+) False crebl2
TU89467 other downstream 1146495 23444174 ~ 23444677 (+) True G66296

Expression Profile